Evidence map›Paper›PMID 28461239›Full record

ArticleDevelopmental biology2017

PHRED-1 is a divergent neurexin-1 homolog that organizes muscle fibers and patterns organs during regeneration.

Carolyn E Adler, Alejandro Sánchez Alvarado

Open access · hybridAbstract read
In one paragraph

Article in Developmental biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.2field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 17 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 2 institutions in 1 country.

Carolyn E AdlerStowers Institute for Medical Research and Howard Hughes Medical Institute, 1000 E. 50th Street, Kansas City, MO 64110, USA; Department of Molecular Medicine, Cornell University, 930 Campus Road, VMC C3-167, Ithaca, NY 14853, USA. Electronic address: cea88@cornell.edu.
Alejandro Sánchez AlvaradoStowers Institute for Medical Research and Howard Hughes Medical Institute, 1000 E. 50th Street, Kansas City, MO 64110, USA. Electronic address: asa@stowers.org.
Cornell University · USHoward Hughes Medical Institute · US

Funding

DEVELOPMENTAL BIOLOGY TRAINING PROGRAMT32HD007491 · NICHD · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI James Alan Gagnon, Kristen M Kwan · 1995 to 2026
$8.0M
The molecular basis of planarian regenerationR37GM057260 · NIGMS · UNIVERSITY OF UTAH · PI SANCHEZ ALVARADO, ALEJANDRO · 2009 to 2018
$2.8M
Mechanisms of Organ Regeneration in the planarian Schmidtea mediterraneaF32GM084661 · NIGMS · UNIVERSITY OF UTAH · PI ADLER, CAROLYN ELIZABETH · 2008 to 2009
$65k
Howard Hughes Medical InstituteNICHD NIH HHS T32 HD007491NIGMS NIH HHS F32 GM084661NIGMS NIH HHS R37 GM057260
6 · The paper itself

Abstract

Regeneration of body parts requires the replacement of multiple cell types. To dissect this complex process, we utilized planarian flatworms that are capable of regenerating any tissue after amputation. An RNAi screen for genes involved in regeneration of the pharynx identified a novel gene, Pharynx regeneration defective-1 (PHRED-1) as essential for normal pharynx regeneration. PHRED-1 is a predicted transmembrane protein containing EGF, Laminin G, and WD40 domains, is expressed in muscle, and has predicted homologs restricted to other lophotrochozoan species. Knockdown of PHRED-1 causes abnormal regeneration of muscle fibers in both the pharynx and body wall muscle. In addition to defects in muscle regeneration, knockdown of PHRED-1 or the bHLH transcription factor MyoD also causes defects in muscle and intestinal regeneration. Together, our data demonstrate that muscle plays a key role in restoring the structural integrity of closely associated organs, and in planarians it may form a scaffold that facilitates normal intestinal branching.

Indexed as

AnimalsBody PatterningCell Adhesion Molecules, NeuronalGene Expression Regulation, DevelopmentalHelminth ProteinsImmunohistochemistryIn Situ HybridizationMembrane ProteinsMicroscopy, ConfocalMuscle Fibers, SkeletalPharynxPlanariansRegenerationReverse Transcriptase Polymerase Chain ReactionRNA InterferenceCell Adhesion Molecules, NeuronalHelminth ProteinsMembrane ProteinsLophotrochozoanMusclePharynxPlanariansRegenerationTransmembrane protein

Identifiers

PMID28461239
PMCPMC5497596
OpenAlexW2951092994

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.