Evidence map›Paper›PMID 28460163›Full record

ArticleChemical research in toxicology2017

Nucleotide Excision Repair Lesion-Recognition Protein Rad4 Captures a Pre-Flipped Partner Base in a Benzo[a]pyrene-Derived DNA Lesion: How Structure Impacts the Binding Pathway.

Hong Mu, Nicholas E Geacintov, Jung-Hyun Min, Yingkai Zhang, Suse Broyde

Abstract read
In one paragraph

Article in Chemical research in toxicology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 38 citations in OpenAlex.

  1. Review
  2. Article
  3. Local sequence context atFrontiers in molecular biosciences · 2025
    Article
  4. Article
  5. Relative genotoxicity of polycyclic aromatic hydrocarbons inferred from free energy perturbation approaches.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  6. Article
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  8. Understanding the ancillary ligand effect on luminescent cyclometalated Ir(III) complex as a reporter for 2-acetylaminofluorene DNA(AAF-dG) adduct.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2022
    Article
  9. DNA Repair in Haploid Context.International journal of molecular sciences · 2021
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hong Mu
Nicholas E Geacintov
Jung-Hyun MinDepartment of Chemistry, University of Illinois at Chicago , Chicago, Illinois 60607, United States.
Yingkai ZhangNYU-ECNU Center for Computational Chemistry at NYU Shanghai , Shanghai 200062, China.
New York University Shanghai · CNUniversity of Illinois Chicago · US

Funding

DNA Lesion Structures: Mutagenicity and RepairR01CA075449 · NCI · NEW YORK UNIVERSITY · PI BROYDE, SUSE · 1997 to 2015
$4.3M
Environmental DNA Lesions and Mutagenesis: Molecular Mechanisms of Lesion Recognition for Repair and Polymerase BypassR01ES025987 · NIEHS · NEW YORK UNIVERSITY · PI BROYDE, SUSE · 2016 to 2025
$3.6M
Computational Studies of Histone ModificationsR01GM079223 · NIGMS · NEW YORK UNIVERSITY · PI ZHANG, YINGKAI · 2007 to 2016
$2.4M
Recognition of Environmental Carcinogen-DNA lesions by NER ProteinsR01ES024050 · NIEHS · NEW YORK UNIVERSITY · PI GEACINTOV, NICHOLAS E · 2014 to 2018
$1.8M
Excision of Carcinogen-DNA Adducts in NucleosomesR01CA168469 · NCI · NEW YORK UNIVERSITY · PI GEACINTOV, NICHOLAS E · 2012 to 2016
$1.6M
NCI NIH HHS R01 CA075449NCI NIH HHS R01 CA168469NIEHS NIH HHS R01 ES024050NIEHS NIH HHS R01 ES025987NIGMS NIH HHS R01 GM079223
6 · The paper itself

Abstract

The xeroderma pigmentosum C protein complex (XPC) recognizes a variety of environmentally induced DNA lesions and is the key in initiating their repair by the nucleotide excision repair (NER) pathway. When bound to a lesion, XPC flips two nucleotide pairs that include the lesion out of the DNA duplex, yielding a productively bound complex that can lead to successful lesion excision. Interestingly, the efficiencies of NER vary greatly among different lesions, influencing their toxicity and mutagenicity in cells. Though differences in XPC binding may influence NER efficiency, it is not understood whether XPC utilizes different mechanisms to achieve productive binding with different lesions. Here, we investigated the well-repaired 10R-(+)-cis-anti-benzo[a]pyrene-N

Indexed as

DNA DamageDNA RepairBenzo(a)pyreneBinding SitesDNADNA-Binding ProteinsModels, MolecularMolecular Dynamics SimulationProtein BindingSaccharomyces cerevisiae ProteinsBenzo(a)pyreneDNADNA-Binding ProteinsRad4 protein, S cerevisiaeSaccharomyces cerevisiae Proteins

Identifiers

PMID28460163
PMCPMC5478902
OpenAlexW2610914559

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.