Evidence map›Paper›PMID 28460005›Full record

ArticleThe journals of gerontology. Series A, Biological sciences and medical sciences2017

Digital PCR Quantitation of Muscle Mitochondrial DNA: Age, Fiber Type, and Mutation-Induced Changes.

Allen Herbst, Kevin Widjaja, Beatrice Nguy, Entela B Lushaj, Timothy M Moore, Andrea L Hevener, Debbie McKenzie, Judd M Aiken, Jonathan Wanagat

Open access · bronzeAbstract read
In one paragraph

Article in The journals of gerontology. Series A, Biological sciences and medical sciences, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 32 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Allen HerbstDepartment of Agricultural, Food and Nutritional Sciences, University of Alberta, Edmonton, Canada.
Kevin WidjajaDepartment of Medicine, David Geffen School of Medicine, University of California, Los Angeles.
Beatrice NguyDepartment of Medicine, David Geffen School of Medicine, University of California, Los Angeles.
Entela B LushajDepartment of Surgery, School of Medicine and Public Health, University of Wisconsin, Madison.
Timothy M MooreDepartment of Medicine, David Geffen School of Medicine, University of California, Los Angeles.
Andrea L HevenerDepartment of Medicine, David Geffen School of Medicine, University of California, Los Angeles.
Debbie McKenzieDepartment of Biological Sciences, University of Alberta, Edmonton, Canada.
Judd M AikenDepartment of Agricultural, Food and Nutritional Sciences, University of Alberta, Edmonton, Canada.
Jonathan WanagatDepartment of Medicine, David Geffen School of Medicine, University of California, Los Angeles.
University of California, Los Angeles · USUniversity of Alberta · CAUniversity of Wisconsin–Madison · US

Funding

Transgenic & Knock-out MouseP30DK063491 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI PETER J TONTONOZ · 2003 to 2026
$40.4M
INTEGRATED TRAINING FOR PHYSICIAN-SCIENTISTST32GM008692 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI BURKARD, MARK E · 1998 to 2020
$10.3M
UCLA OLDER AMERICANS INDEPENDENCE CENTERP30AG028748 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI GREENDALE, GAIL A · 2006 to 2017
$9.8M
UCLA OLDER AMERICANS INDEPENDENT CENTERP60AG010415 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI REUBEN, DAVID B. · 1991 to 2005
$8.0M
Mechanisms controlling skeletal muscle mitochondrial function and metabolic healthR01DK109724 · NIDDK · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI HEVENER, ANDREA L · 2016 to 2020
$2.4M
Mitochondrial genetics in skeletal muscle agingK08AG032873 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI WANAGAT, JONATHAN · 2009 to 2013
$473k
Mitochondrial DNA Health and Metabolic HomeostasisF31DK108657 · NIDDK · UNIVERSITY OF SOUTHERN CALIFORNIA · PI MOORE, TIMOTHY MICHAEL · 2016 to 2018
$126k
NIA NIH HHS P30 AG028748NIA NIH HHS P60 AG010415NIDDK NIH HHS F31 DK108657NIDDK NIH HHS P30 DK063491NIDDK NIH HHS R01 DK109724NIGMS NIH HHS T32 GM008692
6 · The paper itself

Abstract

Definitive quantitation of mitochondrial DNA (mtDNA) and mtDNA deletion mutation abundances would help clarify the role of mtDNA instability in aging. To more accurately quantify mtDNA, we applied the emerging technique of digital polymerase chain reaction to individual muscle fibers and muscle homogenates from aged rodents. Individual fiber mtDNA content correlated with fiber type and decreased with age. We adapted a digital polymerase chain reaction deletion assay that was accurate in mixing experiments to a mutation frequency of 0.03% and quantitated an age-induced increase in deletion frequency from rat muscle homogenates. Importantly, the deletion frequency measured in muscle homogenates strongly correlated with electron transport chain-deficient fiber abundance determined by histochemical analyses. These data clarify the temporal accumulation of mtDNA deletions that lead to electron chain-deficient fibers, a process culminating in muscle fiber loss.

Indexed as

Age FactorsAnimalsDNA, MitochondrialMiceMice, Inbred C57BLMitochondria, MuscleMuscle Fibers, SkeletalPolymerase Chain ReactionRatsRats, Inbred F344Sequence DeletionDNA, MitochondrialAgingDigital PCRMitochondrial DNA deletion mutationsMuscleSingle cell

Identifiers

PMID28460005
PMCPMC5861869
OpenAlexW2608952477

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.