Evidence map›Paper›PMID 28459834›Full record

ArticlePloS one2017

Genome-wide analysis of rice dehydrin gene family: Its evolutionary conservedness and expression pattern in response to PEG induced dehydration stress.

Giti Verma, Yogeshwar Vikram Dhar, Dipali Srivastava, Maria Kidwai, Puneet Singh Chauhan, Sumit Kumar Bag, Mehar Hasan Asif, Debasis Chakrabarty

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
12.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 77 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Identification and Functional Validation of thePlants (Basel, Switzerland) · 2025
    Article
  8. Overexpression ofInternational journal of molecular sciences · 2025
    Article
  9. Article
  10. Overexpression of soybeanGM crops & food · 2024
    Article
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Physiological and molecular signatures reveal differential response of rice genotypes to drought and drought combination with heat and salinity stress.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Giti VermaCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.
Yogeshwar Vikram DharCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.
Dipali SrivastavaCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.
Maria KidwaiCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.
Puneet Singh ChauhanCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.
Sumit Kumar BagCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.
Mehar Hasan AsifCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.
Debasis ChakrabartyCouncil of Scientific and Industrial Research - National Botanical Research Institute (CSIR-NBRI), Lucknow, India.ORCID http://orcid.org/0000-0003-4795-199X
National Botanical Research Institute · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Abiotic stresses adversely affect cellular homeostasis, impairing overall growth and development of plants. These initial stress signals activate downstream signalling processes, which, subsequently, activate stress-responsive mechanisms to re-establish homeostasis. Dehydrins (DHNs) play an important role in combating dehydration stress. Rice (Oryza sativa L.), which is a paddy crop, is susceptible to drought stress. As drought survival in rice might be viewed as a trait with strong evolutionary selection pressure, we observed DHNs in the light of domestication during the course of evolution. Overall, 65 DHNs were identified by a genome-wide survey of 11 rice species, and 3 DHNs were found to be highly conserved. The correlation of a conserved pattern of DHNs with domestication and diversification of wild to cultivated rice was validated by synonymous substitution rates, indicating that Oryza rufipogon and Oryza sativa ssp. japonica follow an adaptive evolutionary pattern; whereas Oryza nivara and Oryza sativa ssp. indica demonstrate a conserved evolutionary pattern. A comprehensive analysis of tissue-specific expression of DHN genes in japonica and their expression profiles in normal and PEG (poly ethylene glycol)-induced dehydration stress exhibited a spatiotemporal expression pattern. Their interaction network reflects the cross-talk between gene expression and the physiological processes mediating adaptation to dehydration stress. The results obtained strongly indicated the importance of DHNs, as they are conserved during the course of domestication.

Indexed as

Chromosome DuplicationChromosomes, PlantConserved SequenceCrops, AgriculturalDatabases, GeneticDehydrationDomesticationEvolution, MolecularGene Expression ProfilingGene Expression Regulation, PlantModels, MolecularOryzaPeptide PHIPlant ProteinsPlant RootsPolyethylene Glycolsdehydrin proteins, plantPeptide PHIPlant ProteinsPolyethylene Glycols

Identifiers

PMID28459834
PMCPMC5411031
OpenAlexW2611126422

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.