Evidence map›Paper›PMID 28459824›Full record

ArticlePloS one2017

Influence of heat stress, sex and genetic groups on reference genes stability in muscle tissue of chicken.

Haniel Cedraz de Oliveira, Antonio Amandio Pinto Garcia, Juliana Gracielle Gonzaga Gromboni, Ronaldo Vasconcelos Farias Filho, Carlos Souza do Nascimento, Amauri Arias Wenceslau

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 36 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Haniel Cedraz de OliveiraPost Graduation program in Animal Science, Universidade Estadual de Santa Cruz - UESC, Ilhéus, Bahia, Brasil.ORCID http://orcid.org/0000-0001-7317-2004
Antonio Amandio Pinto GarciaPost Graduation program in Animal Science, Universidade Estadual de Santa Cruz - UESC, Ilhéus, Bahia, Brasil.
Juliana Gracielle Gonzaga GromboniPost Graduation program in Animal Science, Universidade Estadual de Santa Cruz - UESC, Ilhéus, Bahia, Brasil.
Ronaldo Vasconcelos Farias FilhoDepartament of Rural and Animal Technology - Universidade Estadual do Sudoeste da Bahia - Campus Itapetinga - UESB, Itapetinga, Bahia, Brazil.
Carlos Souza do NascimentoDepartment of Animal Science, Universidade Federal de Sergipe, São Cristovão, Sergipe, Brazil.
Amauri Arias WenceslauPost Graduation program in Animal Science, Universidade Estadual de Santa Cruz - UESC, Ilhéus, Bahia, Brasil.
Universidade Estadual de Santa Cruz · BRSouthwest Bahia State University · BRUniversidade Federal de Sergipe · BR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Quantitative RT-PCR is an important technique for assessing gene expression. However, a proper normalization of reference genes prior to expression analyses of target genes is necessary. The best normalizer is that gene which remains stable in all samples from different treatments. The aim of this study was to identify stable reference genes for normalization of target genes in muscle tissue from three genetically divergent chickens groups (Peloco, Cobb 500® and Caneluda) under environmental (heat stress and comfort) and sex influence. Expressions of ten reference genes were tested for stability in breast muscular tissue (Pectoralis major muscle). Samples were obtained from 36 males and females of two backyard breeds (Caneluda and Peloco) and one commercial line (Cobb 500®) under two environments. The heat stress and comfort temperature were 39 and 23°C, respectively. Animals were housed in the Animal Science Department at Universidade Estadual do Sudoeste da Bahia. We analyzed the expression data by four statistical tools (SLqPCR, NormFinder, Bestkeeper and Comparative CT). According to these tools, genes stability varied according to sex, genetic group and environment, however, some genes remained stable in all analyzes. There was no difference between the most stable genes for sex effect, being MRPS27 more stable for both males and females. In general, MRPS27 was the most stable gene. Within the three genetic groups, the most stable genes were RPL5, HMBS and EEF1 to Cobb 500®, Peloco and Caneluda, respectively. Within the environment, the most stable gene under comfort and heat stress conditions was HMBS and MRPS27, respectively. BestKeeper and Comparative Ct were less correlated (28%) and SLqPCR and NormFinder were the most correlated (98%). MRPS27, RPL5 and MRPS30 genes were considered stable according the overall ranking and can be used as normalizer of relative expression of target genes in muscle tissue of chickens under heat stress.

Indexed as

Sex CharacteristicsAnalysis of VarianceAnimalsAvian ProteinsChickensFemaleGene Expression ProfilingGene Expression RegulationHeat-Shock ResponseHot TemperatureMaleMuscle, SkeletalProtein StabilityReal-Time Polymerase Chain ReactionRNA, MessengerSpecies SpecificityAvian ProteinsRNA, Messenger

Identifiers

PMID28459824
PMCPMC5411030
OpenAlexW2611266298

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.