Evidence map›Paper›PMID 28459528›Full record

ArticleACS chemical biology2017

The A-Rule and Deletion Formation During Abasic and Oxidized Abasic Site Bypass by DNA Polymerase θ.

Daniel J Laverty, April M Averill, Sylvie Doublié, Marc M Greenberg

Abstract read
In one paragraph

Article in ACS chemical biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 15 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Multifaceted Nature of DNA Polymerase θ.International journal of molecular sciences · 2023
    Review
  5. Genome Protection by DNA Polymerase θ.Annual review of genetics · 2022
    Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Daniel J LavertyDepartment of Chemistry, Johns Hopkins University , 3400 N. Charles St., Baltimore, Maryland 21218, United States.
April M AverillDepartment of Microbiology and Molecular Genetics, The Markey Center for Molecular Genetics, The University of Vermont , 95 Carrigan Drive, Burlington, Vermont 05405, United States.
Sylvie DoubliéDepartment of Microbiology and Molecular Genetics, The Markey Center for Molecular Genetics, The University of Vermont , 95 Carrigan Drive, Burlington, Vermont 05405, United States.
Marc M GreenbergDepartment of Chemistry, Johns Hopkins University , 3400 N. Charles St., Baltimore, Maryland 21218, United States.ORCID 0000-0002-5786-6118
Johns Hopkins University · USUniversity of Vermont · US

Funding

Repair, Replication, and Detection of Oxidatively Damaged DNAR01GM063028 · NIGMS · JOHNS HOPKINS UNIVERSITY · PI GREENBERG, MARC M · 2002 to 2018
$5.4M
Processing of Radiation Damage by Translesion DNA SynthesisR01CA052040 · NCI · UNIVERSITY OF VERMONT &ST AGRIC COLLEGE · PI DOUBLIE, SYLVIE · 1991 to 2017
$4.5M
NCI NIH HHS R01 CA052040NIGMS NIH HHS R01 GM063028
6 · The paper itself

Abstract

DNA polymerase θ (Pol θ) is implicated in various cellular processes including double-strand break repair and apurinic/apyrimidinic site bypass. Because Pol θ expression correlates with poor cancer prognosis, the ability of Pol θ to bypass the C4'-oxidized abasic site (C4-AP) and 2-deoxyribonolactone (L), which are generated by cytotoxic agents, is of interest. Translesion synthesis and subsequent extension by Pol θ past C4-AP or L and an abasic site (AP) or its tetrahydrofuran analogue (F) was examined. Pol θ conducts translesion synthesis on templates containing AP and F with similar efficiencies and follows the "A-rule," inserting nucleotides in the order A > G > T. Translesion synthesis on templates containing C4-AP and L is less efficient than AP and F, and the preference for A insertion is reduced for L and absent for C4-AP. Extension past all abasic lesions (AP, F, C4-AP, and L) was significantly less efficient than translesion synthesis and yielded deletions caused by the base one or two nucleotides downstream from the lesion being used as a template, with the latter being favored. These results suggest that bypass of abasic lesions by Pol θ is highly mutagenic.

Indexed as

MutagenesisAnimalsBase SequenceDNA DamageDNA Polymerase betaDNA RepairHumansNucleotidesOxidation-ReductionSequence DeletionSugar AcidsTemplates, Genetic2,4,5-trihydroxypentanoic acid gamma-lactoneDNA Polymerase betaNucleotidesSugar Acids

Identifiers

PMID28459528
PMCPMC5499511
OpenAlexW2610890116

What OpenQuestion holds

Textmetadata
LicenceTDM
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.