Evidence map›Paper›PMID 28457785›Full record

ArticleJournal of virological methods2017

Detection of chikungunya viral RNA in mosquito bodies on cationic (Q) paper based on innovations in synthetic biology.

Lyudmyla G Glushakova, Barry W Alto, Myong Sang Kim, Andrea Bradley, Ozlem Yaren, Steven A Benner

Open access · greenAbstract read
In one paragraph

Article in Journal of virological methods, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.0field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Lyudmyla G GlushakovaFirebird Biomolecular Sciences LLC,13709 Progress Blvd, Box 17, Alachua, FL 32615, United States.
Barry W AltoFlorida Medical Entomology Laboratory, University of Florida, 200 9th Street SE, Vero Beach, FL 32962, United States.
Myong Sang KimFirebird Biomolecular Sciences LLC,13709 Progress Blvd, Box 17, Alachua, FL 32615, United States.
Andrea BradleyFirebird Biomolecular Sciences LLC,13709 Progress Blvd, Box 17, Alachua, FL 32615, United States.
Ozlem YarenFoundation for Applied Molecular Evolution (FfAME), 13709 Progress Blvd, Box 7, Alachua, FL 32615, United States.
Steven A BennerFoundation for Applied Molecular Evolution (FfAME), 13709 Progress Blvd, Box 7, Alachua, FL 32615, United States; Firebird Biomolecular Sciences LLC,13709 Progress Blvd, Box 17, Alachua, FL 32615, United States. Electronic address: manuscripts@ffame.org.
Firebird Biomolecular Sciences (United States) · USFoundation for Applied Molecular Evolution · USUniversity of Florida · US

Funding

Kits for high-multiplexed detection of RNA viruses in complex biological samplesR43GM114967 · NIGMS · FIREBIRD BIOMOLECULAR SCIENCES, LLC · PI BENNER, STEVEN A · 2015 to 2015
$150k
NIGMS NIH HHS R43 GM114967
6 · The paper itself

Abstract

Chikungunya virus (CHIKV) represents a growing and global concern for public health that needs inexpensive and convenient methods to collect mosquitoes as potential carriers so that they can be preserved, stored and transported for later and/or remote analysis. Reported here is a cellulose-based paper, derivatized with quaternary ammonium groups ("Q-paper") that meets these needs. In a series of tests, infected mosquito bodies were squashed directly on Q-paper. Aqueous ammonia was then added on the mosquito bodies to release viral RNA that adsorbed on the cationic surface via electrostatic interactions. The samples were then stored (frozen) or transported. For analysis, the CHIKV nucleic acids were eluted from the Q-paper and PCR amplified in a workflow, previously developed, that also exploited two nucleic acid innovations, ("artificially expanded genetic information systems", AEGIS, and "self-avoiding molecular recognition systems", SAMRS). The amplicons were then analyzed by a Luminex hybridization assay. This procedure detected CHIKV RNA, if present, in each infected mosquito sample, but not in non-infected counterparts or ddH

Indexed as

PaperAedesAnimalsChikungunya virusNucleic Acid HybridizationPreservation, BiologicalQuaternary Ammonium CompoundsRNA, ViralSpecimen HandlingSynthetic BiologyQuaternary Ammonium CompoundsRNA, ViralArtificially expanded genetic information system (AEGIS)Cationic (Q) paperChikungunya virusLuminex direct hybridization assayReverse-transcription PCRSelf-avoiding molecular recognition system (SAMRS)

Identifiers

PMID28457785
PMCPMC5967251
OpenAlexW2607990917

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.