Evidence map›Paper›PMID 28455670›Full record

ArticleArchives of virology2017

Complete nucleotide sequence and annotation of the temperate corynephage ϕ16 genome.

Juliya S Lobanova, Evgueni R Gak, Irina G Andreeva, Konstantin V Rybak, Alexander A Krylov, Sergey V Mashko

Abstract read
In one paragraph

Article in Archives of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Genome Sequence ofmicroPublication biology · 2026
    Article
  2. Genome sequence of PSonyx, a singleton bacteriophage infectingMicrobiology resource announcements · 2024
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Juliya S LobanovaAjinomoto-Genetika Research Institute, 1st Dorozhny pr. 1-1, Moscow, 117545, Russian Federation. Yulia_Lobanova@agri.ru.ORCID http://orcid.org/0000-0003-3512-5105
Evgueni R GakAjinomoto-Genetika Research Institute, 1st Dorozhny pr. 1-1, Moscow, 117545, Russian Federation.
Irina G AndreevaAjinomoto-Genetika Research Institute, 1st Dorozhny pr. 1-1, Moscow, 117545, Russian Federation.
Konstantin V RybakAjinomoto-Genetika Research Institute, 1st Dorozhny pr. 1-1, Moscow, 117545, Russian Federation.
Alexander A KrylovAjinomoto-Genetika Research Institute, 1st Dorozhny pr. 1-1, Moscow, 117545, Russian Federation.
Sergey V MashkoAjinomoto-Genetika Research Institute, 1st Dorozhny pr. 1-1, Moscow, 117545, Russian Federation.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The complete genome of ϕ16, a temperate corynephage from Corynebacterium glutamicum ATCC 21792, was sequenced and annotated (GenBank: KY250482). The electron microscopy study of ϕ16 virion confirmed that it belongs to the family Siphoviridae. The ϕ16 genome consists of a linear double-stranded DNA molecule of 58,200 bp (G+C = 52.2%) with protruding cohesive 3'-ends of 14 nt. Four major structural proteins were separated by SDS-PAGE and identified by peptide mass fingerprinting technique. Using bioinformatics analysis, 101 putative ORFs and 5 tRNA genes were predicted. Only 27 putative gene products could be assigned to known biological functions. The ϕ16 genome was divided into functional modules. Seven putative promoters and eight putative unidirectional intrinsic terminators were predicted. One site of putative «-1» programmed ribosomal frameshifting was proposed in the phage tail assembly genome region. C. glutamicum genetic tools could be broadened by exploiting the known integrase gene (gp33) and the newly identified excisionase gene (gp47), participating in site-specific recombination between ϕ16-attP/attB.

Indexed as

Genome, ViralComputational BiologyCorynebacterium glutamicumDNA NucleotidyltransferasesDNA, ViralElectrophoresis, Polyacrylamide GelIntegrasesMolecular Sequence AnnotationOpen Reading FramesPromoter Regions, GeneticRecombination, GeneticSequence Analysis, DNASiphoviridaeViral ProteinsDNA NucleotidyltransferasesDNA, ViralexcisionaseIntegrasesViral Proteins

Identifiers

PMID28455670
PMCPMC5506516

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.