Evidence map›Paper›PMID 28455392›Full record

ArticleCancer discovery2017

Biomarker Accessible and Chemically Addressable Mechanistic Subtypes of BRAF Melanoma.

Banu Eskiocak, Elizabeth A McMillan, Saurabh Mendiratta, Rahul K Kollipara, Hailei Zhang, Caroline G Humphries, Changguang Wang, Jose Garcia-Rodriguez, Ming Ding, Aubhishek Zaman and 17 more

Abstract read
In one paragraph

Article in Cancer discovery, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed.

  1. Article
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  8. Identification of 1Journal of enzyme inhibition and medicinal chemistry · 2022
    Article
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  11. The role of TBK1 in cancer pathogenesis and anticancer immunity.Journal of experimental & clinical cancer research : CR · 2022
    Review
  12. Article
  13. Article
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  16. Review
  17. Article
  18. Many Distinct Ways Lead to Drug Resistance inLife (Basel, Switzerland) · 2021
    Review
  19. Targeting AXL in NSCLC.Lung Cancer (Auckland, N.Z.) · 2021
    Review
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

27 authors.

Banu EskiocakDepartment of Cell Biology, The University of Texas Southwestern Medical Center, Dallas, Texas.
Elizabeth A McMillanDepartment of Cell Biology, The University of Texas Southwestern Medical Center, Dallas, Texas.
Saurabh MendirattaDepartment of Cell Biology, The University of Texas Southwestern Medical Center, Dallas, Texas.
Rahul K KolliparaEugene McDermott Center for Human Growth and Development, The University of Texas Southwestern Medical Center, Dallas, Texas.
Hailei ZhangThe Broad Institute of Harvard and Massachusetts Institute of Technology, Cambridge, Massachusetts.
Caroline G HumphriesEugene McDermott Center for Human Growth and Development, The University of Texas Southwestern Medical Center, Dallas, Texas.
Changguang WangDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, Texas.
Jose Garcia-RodriguezDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, Texas.
Ming DingDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, Texas.
Aubhishek ZamanDepartment of Cell Biology, The University of Texas Southwestern Medical Center, Dallas, Texas.
Tracy I RosalesDepartment of Cell Biology, The University of Texas Southwestern Medical Center, Dallas, Texas.
Ugur EskiocakChildren's Research Institute and the Department of Pediatrics, The University of Texas Southwestern Medical Center, Dallas, Texas.
Michael P SmithManchester Cancer Research Centre, Wellcome Trust Centre for Cell-Matrix Research, The University of Manchester, Manchester, United Kingdom.
Jessica SudderthChildren's Research Institute and the Department of Pediatrics, The University of Texas Southwestern Medical Center, Dallas, Texas.
Kakajan KomurovDivision of Biomedical Informatics, Cincinnati Children's Hospital Medical Center, Cincinnati, Ohio.
Ralph J DeberardinisChildren's Research Institute and the Department of Pediatrics, The University of Texas Southwestern Medical Center, Dallas, Texas.
Claudia WellbrockManchester Cancer Research Centre, Wellcome Trust Centre for Cell-Matrix Research, The University of Manchester, Manchester, United Kingdom.
Michael A DaviesDepartment of Melanoma Medical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Jennifer A WargoDepartment of Surgical Oncology, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Yonghao YuDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, Texas.
Jef K De BrabanderDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, Texas.
Noelle S WilliamsDepartment of Biochemistry, The University of Texas Southwestern Medical Center, Dallas, Texas.
Lynda ChinDepartment of Genomic Medicine, The University of Texas MD Anderson Cancer Center, Houston, Texas.
Helen RizosMelanoma Institute, University of Sydney, Sydney, New South Wales, Australia.
Georgina V LongMelanoma Institute, University of Sydney, Sydney, New South Wales, Australia.
Ralf KittlerEugene McDermott Center for Human Growth and Development, The University of Texas Southwestern Medical Center, Dallas, Texas.
Michael A WhiteDepartment of Cell Biology, The University of Texas Southwestern Medical Center, Dallas, Texas. michael.white@utsouthwestern.edu.

Funding

UT Southwestern Medical Center Simmons Comprehensive Cancer CenterP30CA142543 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI Sandi Leigh Pruitt · 2010 to 2026
$53.7M
UT M.D. Anderson Cancer Center SPORE in MelanomaP50CA093459 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI GRIMM, ELIZABETH A · 2004 to 2014
$23.7M
COMPONENTS OF RAS-MEDIATED GROWTH CONTROLR01CA071443 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI WHITE, MICHAEL A. · 1996 to 2015
$4.8M
Lung cancer oncogenotype-selective drug target discoveryU01CA176284 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI MACMILLAN, JOHN B, MINNA, JOHN D. · 2013 to 2016
$2.8M
Molecular and Biochemical Basis of mTORC1-mediated Feedback LoopsR01GM114160 · NIGMS · UT SOUTHWESTERN MEDICAL CENTER · PI YU, YONGHAO · 2015 to 2019
$1.6M
Targeting Mechanistic Subtypes of Neoplastic DiseaseR35CA197717 · NCI · UT SOUTHWESTERN MEDICAL CENTER · PI WHITE, MICHAEL A. · 2015 to 2015
$725k
Exploring synergy of combined BRAF-targeted therapy & immunotherapy for melanomaK08CA160692 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI WARGO, JENNIFER A. · 2012 to 2016
$713k
NCI NIH HHS K08 CA160692NCI NIH HHS P30 CA142543NCI NIH HHS P50 CA093459NCI NIH HHS R01 CA071443NCI NIH HHS R35 CA197717NCI NIH HHS U01 CA176284NIGMS NIH HHS R01 GM114160
6 · The paper itself

Abstract

Genomic diversity among melanoma tumors limits durable control with conventional and targeted therapies. Nevertheless, pathologic activation of the ERK1/2 pathway is a linchpin tumorigenic mechanism associated with the majority of primary and recurrent disease. Therefore, we sought to identify therapeutic targets that are selectively required for tumorigenicity in the presence of pathologic ERK1/2 signaling. By integration of multigenome chemical and genetic screens, recurrent architectural variants in melanoma tumor genomes, and patient outcome data, we identified two mechanistic subtypes of BRAF

Indexed as

AnimalsBiomarkers, TumorCarcinogenesisDrug Resistance, NeoplasmHumansI-kappa B KinaseMAP Kinase Signaling SystemMelanomaMiceMutationProtein Kinase InhibitorsProtein Serine-Threonine KinasesProto-Oncogene Proteins B-rafXenograft Model Antitumor AssaysBiomarkers, TumorBRAF protein, humanI-kappa B KinaseIKBKE protein, humanProtein Kinase InhibitorsProtein Serine-Threonine KinasesProto-Oncogene Proteins B-rafTBK1 protein, human

Identifiers

PMID28455392
PMCPMC5540806

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.