Evidence map›Paper›PMID 28455337›Full record

ArticleApplied and environmental microbiology2017

Laboratory Evolution to Alternating Substrate Environments Yields Distinct Phenotypic and Genetic Adaptive Strategies.

Troy E Sandberg, Colton J Lloyd, Bernhard O Palsson, Adam M Feist

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 53 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
53citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

53 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Interaction between mutation type and gene pleiotropy drives parallel evolution in the laboratory.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2023
    Pooled it
  2. ACS synthetic biology · 2021
    Pooled it
  3. Review
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  15. Signatures of selection inEvolutionary applications · 2024
    Article
  16. Review
  17. Inducible CRISPR-targeted "knockdown" of human gutProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  18. Article
  19. Article
  20. Whole-genome sequences from wild-type and laboratory-evolved strains define the alleleome and establish its hallmarks.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Troy E SandbergDepartment of Bioengineering, University of California, San Diego, California, USA.
Colton J LloydDepartment of Bioengineering, University of California, San Diego, California, USA.
Bernhard O PalssonDepartment of Bioengineering, University of California, San Diego, California, USA.
Adam M FeistDepartment of Bioengineering, University of California, San Diego, California, USA afeist@ucsd.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Adaptive laboratory evolution (ALE) experiments are often designed to maintain a static culturing environment to minimize confounding variables that could influence the adaptive process, but dynamic nutrient conditions occur frequently in natural and bioprocessing settings. To study the nature of carbon substrate fitness tradeoffs, we evolved batch cultures of

Indexed as

Culture MediaEnvironmentEscherichia coliGenetic FitnessGenome, BacterialGlucoseGlycerolPhenotypeXyloseCulture MediaGlucoseGlycerolXyloseadaptive laboratory evolutionadaptive mutationsEscherichia coliphenotypic variation

Identifiers

PMID28455337
PMCPMC5478979

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.