Evidence map›Paper›PMID 28455290›Full record

ArticleAmerican journal of physiology. Heart and circulatory physiology2017

Quantitative cardiac phosphoproteomics profiling during ischemia-reperfusion in an immature swine model.

Dolena Ledee, Min A Kang, Masaki Kajimoto, Samuel Purvine, Heather Brewer, Ljiljana Pasa-Tolic, Michael A Portman

Open access · bronzeAbstract read
In one paragraph

Article in American journal of physiology. Heart and circulatory physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

  1. Proteomics of the heart.Physiological reviews · 2024
    Review
  2. Article
  3. Article
  4. Quantitative proteomic and phosphoproteomic profiling of ischemic myocardial stunning in swine.American journal of physiology. Heart and circulatory physiology · 2020
    Article
  5. Evaluating Novel Targets of Ischemia Reperfusion Injury in Pig Models.International journal of molecular sciences · 2019
    Review
  6. Statistical considerations in reporting cardiovascular research.American journal of physiology. Heart and circulatory physiology · 2018
    Article
  7. Article
  8. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 1 country.

Dolena LedeeCenter for Developmental Therapeutics, Seattle Children's Research Institute, Seattle, Washington.
Min A KangCenter for Developmental Therapeutics, Seattle Children's Research Institute, Seattle, Washington.
Masaki KajimotoCenter for Developmental Therapeutics, Seattle Children's Research Institute, Seattle, Washington.
Samuel PurvineEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington; and.
Heather BrewerEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington; and.
Ljiljana Pasa-TolicEnvironmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, Washington; and.
Michael A PortmanCenter for Developmental Therapeutics, Seattle Children's Research Institute, Seattle, Washington; michael.portman@seattlechildrens.org.
Pacific Northwest National Laboratory · USSeattle Children's Hospital · USUniversity of Washington · USEnvironmental Molecular Sciences Laboratory · US

Funding

Thyroid Regulation in the Developing HeartR01HL060666 · NHLBI · UNIVERSITY OF WASHINGTON · PI PORTMAN, MICHAEL A · 1998 to 2013
$4.7M
Regulation Mechanisms of Thyroid Hormone Receptors in the HeartK01HL120886 · NHLBI · SEATTLE CHILDREN'S HOSPITAL · PI LEDEE, DOLENA ROSELLE · 2014 to 2018
$723k
NHLBI NIH HHS K01 HL120886NHLBI NIH HHS R01 HL060666
6 · The paper itself

Abstract

Ischemia-reperfusion (I/R) results in altered metabolic and molecular responses, and phosphorylation is one of the most noted regulatory mechanisms mediating signaling mechanisms during physiological stresses. To expand our knowledge of the potential phosphoproteomic changes in the myocardium during I/R, we used Isobaric Tags for Relative and Absolute Quantitation-based analyses in left ventricular samples obtained from porcine hearts under control or I/R conditions. The data are available via ProteomeXchange with identifier PXD006066. We identified 1,896 phosphopeptides within left ventricular control and I/R porcine samples. Significant differential phosphorylation between control and I/R groups was discovered in 111 phosphopeptides from 86 proteins. Analysis of the phosphopeptides using Motif-x identified five motifs: (..R..S..), (..SP..), (..S.S..), (..S…S..), and (..S.T..). Semiquantitative immunoblots confirmed site location and directional changes in phosphorylation for phospholamban and pyruvate dehydrogenase E1, two proteins known to be altered by I/R and identified by this study. Novel phosphorylation sites associated with I/R were also identified. Functional characterization of the phosphopeptides identified by our methodology could expand our understanding of the signaling mechanisms involved during I/R damage in the heart as well as identify new areas to target therapeutic strategies.

Indexed as

AnimalsGene Expression Regulation, DevelopmentalMaleMyocardiumPhosphoproteinsProteomeReperfusion InjurySwinePhosphoproteinsProteomeischemia-reperfusionIsobaric Tags for Relative and Absolute Quantitationphosphoproteomics

Identifiers

PMID28455290
PMCPMC5538860
OpenAlexW2608317894

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.