Evidence map›Paper›PMID 28454650›Full record

ArticleTuberculosis (Edinburgh, Scotland)2017

Significant under expression of the DosR regulon in M. tuberculosis complex lineage 6 in sputum.

Boatema Ofori-Anyinam, Gregory Dolganov, Tran Van, J Lucian Davis, Nicholas D Walter, Benjamin J Garcia, Marty Voskuil, Kristina Fissette, Maren Diels, Michèle Driesen and 8 more

Open access · hybridAbstract readComparative StudyMulticenter Study
In one paragraph

Article in Tuberculosis (Edinburgh, Scotland), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Macrophage susceptibility to infection by GhanaianFrontiers in cellular and infection microbiology · 2023
    Article
  4. Article
  5. Review
  6. Understanding the Genetic Diversity ofFrontiers in genetics · 2022
    Article
  7. Review
  8. Multidrug-resistant strains ofVeterinary world · 2020
    Article
  9. Article
  10. Experimental Evidence for LimitedFrontiers in microbiology · 2019
    Article
  11. Article
  12. Article
  13. Observational
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 9 institutions in 5 countries.

Boatema Ofori-AnyinamMycobacteriology Unit, Institute of Tropical Medicine (ITM), Nationalestraat 155, 2000, Antwerp, Belgium; Vaccines and Immunity Theme, Medical Research Council (MRC) Unit, The Gambia, Atlantic Boulevard, Fajara, P.O. Box 273, Banjul, Gambia.
Gregory DolganovDepartment of Microbiology and Immunology, Stanford University, 299 Campus Drive, Stanford, CA, 94305, USA.
Tran VanDepartment of Microbiology and Immunology, Stanford University, 299 Campus Drive, Stanford, CA, 94305, USA.
J Lucian DavisDepartment of Epidemiology of Microbial Diseases, Yale School of Public Health, 60 College Street, P.O. Box 208034, New Haven, CT, 06520-8034, USA; Department of Pulmonary, Critical Care, and Sleep Medicine, Yale School of Medicine, P.O. Box 208057, 300 Cedar Street TAC - 441 South, New Haven, CT, 06520-8057, USA.
Nicholas D WalterDivision of Pulmonary Sciences and Critical Care Medicine, University of Colorado Denver, Building 500 - 13001 E, 17th Place, Campus Box C290, Aurora, CO, 80045, USA; Pulmonary Section, Denver Veterans Affairs Medical Center, 1055 Clermont Street, Denver, CO, 80220, USA; Integrated Center for Genes, Environment, & Health, National Jewish Health, Smith Building; A647, 1400 Jackson Street, Denver, CO, 80206, USA.
Benjamin J GarciaIntegrated Center for Genes, Environment, & Health, National Jewish Health, Smith Building; A647, 1400 Jackson Street, Denver, CO, 80206, USA; Computational Bioscience Program, University of Colorado Denver, Building 500 - 13001 E, 17th Place, Campus Box C290, Aurora, CO, 80045, USA.
Marty VoskuilDepartment of Immunology and Microbiology, University of Colorado School of Medicine, 12800 E. 19th Ave., Mail Stop 8333, Aurora, CO, 80045, USA.
Kristina FissetteMycobacteriology Unit, Institute of Tropical Medicine (ITM), Nationalestraat 155, 2000, Antwerp, Belgium.
Maren DielsMycobacteriology Unit, Institute of Tropical Medicine (ITM), Nationalestraat 155, 2000, Antwerp, Belgium.
Michèle DriesenMycobacteriology Unit, Institute of Tropical Medicine (ITM), Nationalestraat 155, 2000, Antwerp, Belgium.
Conor J MeehanMycobacteriology Unit, Institute of Tropical Medicine (ITM), Nationalestraat 155, 2000, Antwerp, Belgium.
Dorothy Yeboah-ManuNoguchi Memorial Institute for Medical Research, University of Ghana, P.O. Box LG 581, Legon, Accra, Ghana.
Mireia CoscollaDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, P.O. Box 4002, Basel, Switzerland; University of Basel, Petersplatz 1, P.O. Box 4001, Basel, Switzerland.
Sebastien GagneuxDepartment of Medical Parasitology and Infection Biology, Swiss Tropical and Public Health Institute, P.O. Box 4002, Basel, Switzerland; University of Basel, Petersplatz 1, P.O. Box 4001, Basel, Switzerland.
Martin AntonioVaccines and Immunity Theme, Medical Research Council (MRC) Unit, The Gambia, Atlantic Boulevard, Fajara, P.O. Box 273, Banjul, Gambia.
Gary SchoolnikDepartment of Microbiology and Immunology, Stanford University, 299 Campus Drive, Stanford, CA, 94305, USA.
Florian GehreMycobacteriology Unit, Institute of Tropical Medicine (ITM), Nationalestraat 155, 2000, Antwerp, Belgium; Vaccines and Immunity Theme, Medical Research Council (MRC) Unit, The Gambia, Atlantic Boulevard, Fajara, P.O. Box 273, Banjul, Gambia.
Bouke C de JongMycobacteriology Unit, Institute of Tropical Medicine (ITM), Nationalestraat 155, 2000, Antwerp, Belgium. Electronic address: bdejong@itg.be.
Instituut voor Tropische Geneeskunde · BEMRC Unit the Gambia · GMStanford University · USSwiss Tropical and Public Health Institute · CHJackson Memorial Hospital · USUniversity of Colorado Denver · USUniversity of Ghana · GHVeterans Health Administration · USYale University · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
The Mycobacterium Tuberculosis Dormancy ProgramR01AI061505 · NIAID · UNIVERSITY OF COLORADO DENVER · PI VOSKUIL, MARTIN INUA · 2005 to 2015
$3.6M
Blood Expression Profiles as a Biomarker for Responses to Tuberculosis TreatmentIK2CX000914 · VA · VA EASTERN COLORADO HEALTH CARE SYSTEM · PI WALTER, NICHOLAS D · 2014 to 2018
–
CSRD VA IK2 CX000914NCATS NIH HHS UL1 TR001863NIAID NIH HHS R01 AI061505
6 · The paper itself

Abstract

Mycobacterium africanum lineage (L) 6 is an important pathogen in West Africa, causing up to 40% of pulmonary tuberculosis (TB). The biology underlying the clinical differences between M. africanum and M. tuberculosis sensu stricto remains poorly understood. We performed ex vivo expression of 2179 genes of the most geographically dispersed cause of human TB, M. tuberculosis L4 and the geographically restricted, M. africanum L6 directly from sputa of 11 HIV-negative TB patients from The Gambia who had not started treatment. The DosR regulon was the most significantly decreased category in L6 relative to L4. Further, we identified nonsynonymous mutations in major DosR regulon genes of 44 L6 genomes of TB patients from The Gambia and Ghana. Using Lebek's test, we assessed differences in oxygen requirements for growth. L4 grew only at the aerobic surface while L6 grew throughout the medium. In the host, the DosR regulon is critical for M. tuberculosis in adaptation to oxygen limitation. However, M. africanum L6 appears to have adapted to growth under hypoxic conditions or to different biological niches. The observed under expression of DosR in L6 fits with the genomic changes in DosR genes, microaerobic growth and the association with extrapulmonary disease.

Indexed as

Adaptation, PhysiologicalBacterial ProteinsDNA-Binding ProteinsGambiaGene Expression Regulation, BacterialGenotypeGhanaHumansMolecular EpidemiologyMycobacterium tuberculosisOxygenPhenotypePolymorphism, Single NucleotideProtein KinasesSputumTuberculosis, PulmonaryBacterial ProteinsDNA-Binding ProteinsDosR protein, Mycobacterium tuberculosisOxygenProtein KinasesDosRGene expressionHypoxiaMycobacterium africanumMycobacterium tuberculosisSputum

Identifiers

PMID28454650
PMCPMC5421582
OpenAlexW2593312410

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.