Evidence map›Paper›PMID 28453743›Full record

ArticleNeuro-oncology2017

Targeted next-generation sequencing of pediatric neuro-oncology patients improves diagnosis, identifies pathogenic germline mutations, and directs targeted therapy.

Cassie N Kline, Nancy M Joseph, James P Grenert, Jessica van Ziffle, Eric Talevich, Courtney Onodera, Mariam Aboian, Soonmee Cha, David R Raleigh, Steve Braunstein and 18 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Neuro-oncology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 163 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
163citing papers in PubMed, 1 pooled it
17.1field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

163 citing papers in PubMed, 1 synthesis or guideline pooled it, 231 citations in OpenAlex.

  1. Guideline
  2. Trial
  3. Trial
  4. Article
  5. Review
  6. A Genomically Tailored Multiagent Precision Medicine Clinical Trial for Adults with Recurrent Glioblastoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2026
    Article
  7. Clinical challenges of cancer predisposition syndromes with pediatric central nervous system tumors: a single-center study.Child's nervous system : ChNS : official journal of the International Society for Pediatric Neurosurgery · 2025
    Article
  8. Article
  9. Article
  10. Article
  11. Cancers · 2025
    Review
  12. Article
  13. Article
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  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article

103 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

28 authors at 2 institutions in 1 country.

Cassie N KlineDivision of Pediatric Hematology/Oncology, Department of Pediatrics, University of California San Francisco (UCSF), San Francisco, California, USA.
Nancy M JosephDepartment of Pathology, UCSF, San Francisco, California, USA.
James P GrenertDepartment of Pathology, UCSF, San Francisco, California, USA.
Jessica van ZiffleDepartment of Pathology, UCSF, San Francisco, California, USA.
Eric TalevichClinical Cancer Genomics Laboratory, UCSF, San Francisco, California, USA.
Courtney OnoderaClinical Cancer Genomics Laboratory, UCSF, San Francisco, California, USA.
Mariam AboianDepartment of Radiology, UCSF, San Francisco, California, USA.
Soonmee ChaDepartment of Radiology, UCSF, San Francisco, California, USA.
David R RaleighDepartment of Radiation Oncology, UCSF, San Francisco, California, USA.
Steve BraunsteinDepartment of Radiation Oncology, UCSF, San Francisco, California, USA.
Joseph TorkildsonDivision of Pediatric Hematology/Oncology, UCSF Benioff Children's Hospital Oakland,Oakland, California, USA.
David SamuelDivision of Pediatric Hematology/Oncology, Valley Children's Hospital, Madera, California, USA.
Michelle BloomerDepartment of Ophthalmology, UCSF, San Francisco, California, USA.
Alejandra G de Alba CampomanesDepartment of Ophthalmology, UCSF, San Francisco, California, USA.
Anuradha BanerjeeDivision of Pediatric Hematology/Oncology, Department of Pediatrics, University of California San Francisco (UCSF), San Francisco, California, USA.
Nicholas ButowskiDivision of Neuro-Oncology, Department of Neurological Surgery, UCSF, San Francisco, California, USA.
Corey RaffelDepartment of Neurological Surgery, UCSF, San Francisco, California, USA.
Tarik TihanDepartment of Pathology, UCSF, San Francisco, California, USA.
Andrew W BollenDepartment of Pathology, UCSF, San Francisco, California, USA.
Joanna J PhillipsDepartment of Pathology, UCSF, San Francisco, California, USA.
W Michael KornDivisions of Gastroenterology and Medical Oncology, Department of Medicine, UCSF, San Francisco, California, USA.
Iwei YehDepartment of Pathology, UCSF, San Francisco, California, USA.
Boris C BastianDepartment of Pathology, UCSF, San Francisco, California, USA.
Nalin GuptaDepartment of Neurological Surgery, UCSF, San Francisco, California, USA.
Sabine MuellerDivision of Pediatric Hematology/Oncology, Department of Pediatrics, University of California San Francisco (UCSF), San Francisco, California, USA.
Arie PerryDepartment of Pathology, UCSF, San Francisco, California, USA.
Theodore NicolaidesDivision of Pediatric Hematology/Oncology, Department of Pediatrics, University of California San Francisco (UCSF), San Francisco, California, USA.
David A SolomonDepartment of Pathology, UCSF, San Francisco, California, USA.
University of California, San Francisco · USNeurological Surgery · US

Funding

Tissue CoreP50CA097257 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Joseph F Costello · 2002 to 2026
$57.4M
Clinical and Transtional Science InstituteKL2TR000143 · NCATS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GRANDIS, JENNIFER RUBIN · 2012 to 2015
$11.9M
Research Training in Childhood CancerT32CA128583 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI Eric Alejandro Sweet-Cordero · 2007 to 2026
$6.0M
Cohesin gene mutations in tumorigenesisDP5OD021403 · OD · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SOLOMON, DAVID A. · 2015 to 2019
$2.0M
NCATS NIH HHS KL2 TR000143NCI NIH HHS P50 CA097257NCI NIH HHS T32 CA128583NIH HHS DP5 OD021403
6 · The paper itself

Abstract

Background: Molecular profiling is revolutionizing cancer diagnostics and leading to personalized therapeutic approaches. Herein we describe our clinical experience performing targeted sequencing for 31 pediatric neuro-oncology patients. Methods: We sequenced 510 cancer-associated genes from tumor and peripheral blood to identify germline and somatic mutations, structural variants, and copy number changes. Results: Genomic profiling was performed on 31 patients with tumors including 11 high-grade gliomas, 8 medulloblastomas, 6 low-grade gliomas, 1 embryonal tumor with multilayered rosettes, 1 pineoblastoma, 1 uveal ganglioneuroma, 1 choroid plexus carcinoma, 1 chordoma, and 1 high-grade neuroepithelial tumor. In 25 cases (81%), results impacted patient management by: (i) clarifying diagnosis, (ii) identifying pathogenic germline mutations, or (iii) detecting potentially targetable alterations. The pathologic diagnosis was amended after genomic profiling for 6 patients (19%), including a high-grade glioma to pilocytic astrocytoma, medulloblastoma to pineoblastoma, ependymoma to high-grade glioma, and medulloblastoma to CNS high-grade neuroepithelial tumor with BCOR alteration. Multiple patients had pathogenic germline mutations, many of which were previously unsuspected. Potentially targetable alterations were identified in 19 patients (61%). Additionally, novel likely pathogenic alterations were identified in 3 cases: an in-frame RAF1 fusion in a BRAF wild-type pleomorphic xanthoastrocytoma, an inactivating ASXL1 mutation in a histone H3 wild-type diffuse pontine glioma, and an in-frame deletion within exon 2 of MAP2K1 in a low-grade astrocytic neoplasm. Conclusions: Our experience demonstrates the significant impact of molecular profiling on diagnosis and treatment of pediatric brain tumors and confirms its feasibility for use at the time of diagnosis or recurrence.

Indexed as

Germ-Line MutationMolecular Targeted TherapyAdolescentAdultAntineoplastic AgentsBiomarkers, TumorBrain NeoplasmsChildChild, PreschoolFemaleHigh-Throughput Nucleotide SequencingHumansInfantMalePrognosisYoung AdultAntineoplastic AgentsBiomarkers, Tumormolecular profilingnext-generation sequencingpediatric brain tumorspersonalized therapytargeted therapeutics

Identifiers

PMID28453743
PMCPMC5464451
OpenAlexW2555272704

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.