Evidence map›Paper›PMID 28452363›Full record

ArticleNature communications2017

Mechanism of SOS PR-domain autoinhibition revealed by single-molecule assays on native protein from lysate.

Young Kwang Lee, Shalini T Low-Nam, Jean K Chung, Scott D Hansen, Hiu Yue Monatrice Lam, Steven Alvarez, Jay T Groves

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
4.1field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Article
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  4. Enzymatic Reactions Dictated by the 2D Membrane Environment.The journal of physical chemistry letters · 2025
    Article
  5. Article
  6. Article
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  12. A two-component protein condensate of the EGFR cytoplasmic tail and Grb2 regulates Ras activation by SOS at the membrane.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  13. Stochasticity and positive feedback enable enzyme kinetics at the membrane to sense reaction size.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  14. Relating cellular signaling timescales to single-molecule kinetics: A first-passage time analysis of Ras activation by SOS.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  15. Review
  16. Article
  17. Raf promotes dimerization of the Ras G-domain with increased allosteric connections.Proceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  18. Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Young Kwang LeeDepartment of Chemistry, University of California, 408A Stanley Hall, Berkeley, California 94720, USA.
Shalini T Low-NamDepartment of Chemistry, University of California, 408A Stanley Hall, Berkeley, California 94720, USA.
Jean K ChungDepartment of Chemistry, University of California, 408A Stanley Hall, Berkeley, California 94720, USA.
Scott D HansenDepartment of Chemistry, University of California, 408A Stanley Hall, Berkeley, California 94720, USA.
Hiu Yue Monatrice LamDepartment of Chemistry, University of California, 408A Stanley Hall, Berkeley, California 94720, USA.
Steven AlvarezDepartment of Chemistry, University of California, 408A Stanley Hall, Berkeley, California 94720, USA.
Jay T GrovesDepartment of Chemistry, University of California, 408A Stanley Hall, Berkeley, California 94720, USA.
University of California, Berkeley · USLawrence Berkeley National Laboratory · US

Funding

Understand the metabolic fitness of naïve T cellsP01AI091580 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI ARTHUR WEISS · 2011 to 2026
$31.1M
ECM geometrical and mechanical properties modulate RTK signalingU01CA202241 · NCI · UNIVERSITY OF CALIFORNIA BERKELEY · PI GROVES, JAY T., WEAVER, VALERIE MARIE · 2015 to 2019
$3.3M
NCI NIH HHS U01 CA202241NIAID NIH HHS P01 AI091580
6 · The paper itself

Abstract

The guanine nucleotide exchange factor (GEF) Son of Sevenless (SOS) plays a critical role in signal transduction by activating Ras. Here we introduce a single-molecule assay in which individual SOS molecules are captured from raw cell lysate using Ras-functionalized supported membrane microarrays. This enables characterization of the full-length SOS protein, which has not previously been studied in reconstitution due to difficulties in purification. Our measurements on the full-length protein reveal a distinct role of the C-terminal proline-rich (PR) domain to obstruct the engagement of allosteric Ras independently of the well-known N-terminal domain autoinhibition. This inhibitory role of the PR domain limits Grb2-independent recruitment of SOS to the membrane through binding of Ras·GTP in the SOS allosteric binding site. More generally, this assay strategy enables characterization of the functional behaviour of GEFs with single-molecule precision but without the need for purification.

Indexed as

Models, MolecularProtein DomainsAllosteric SiteBinding SitesCell MembraneGRB2 Adaptor ProteinHEK293 CellsHumansMicroscopy, FluorescenceProtein Bindingras ProteinsSOS1 ProteinGRB2 Adaptor Proteinras ProteinsSOS1 Protein

Identifiers

PMID28452363
PMCPMC5414354
OpenAlexW2609511631

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.