Evidence map›Paper›PMID 28451899›Full record

ArticleArchives of virology2017

Determination of the complete genomic sequence of Neofusicoccum luteum mitovirus 1 (NLMV1), a novel mitovirus associated with a phytopathogenic Botryosphaeriaceae.

Armelle Marais, Aurélia Nivault, Chantal Faure, Sébastien Theil, Gwenaëlle Comont, Thierry Candresse, Marie-France Corio-Costet

Open access · hybridAbstract read
In one paragraph

Article in Archives of virology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 4 institutions in 2 countries.

Armelle MaraisUMR 1332 Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS 20032, 33882, Villenave d'Ornon Cedex, France. armelle.marais-colombel@inra.fr.
Aurélia NivaultUMR 1035 Santé et Agroécologie du Vignoble, INRA, Bordeaux Sciences Agro, CS 20032, 33882, Villenave d'Ornon Cedex, France.
Chantal FaureUMR 1332 Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS 20032, 33882, Villenave d'Ornon Cedex, France.
Sébastien TheilUMR 1332 Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS 20032, 33882, Villenave d'Ornon Cedex, France.
Gwenaëlle ComontUMR 1035 Santé et Agroécologie du Vignoble, INRA, Bordeaux Sciences Agro, CS 20032, 33882, Villenave d'Ornon Cedex, France.
Thierry CandresseUMR 1332 Biologie du Fruit et Pathologie, INRA, Univ. Bordeaux, CS 20032, 33882, Villenave d'Ornon Cedex, France.
Marie-France Corio-CostetUMR 1035 Santé et Agroécologie du Vignoble, INRA, Bordeaux Sciences Agro, CS 20032, 33882, Villenave d'Ornon Cedex, France.
Biologie du Fruit et Pathologie · FRInstitut National de la Recherche Agronomique · MAUniversité de Bordeaux · FRInstitut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Neofusicoccum luteum species belongs to the Botryosphaeriaceae family and is involved in grapevine wood decay diseases. The present study reports the discovery and the molecular characterization of a novel mitovirus infecting this fungus. Double-stranded RNAs were purified from cultivated N. luteum and analysed by next generation sequencing. Using contigs showing BlastX homology with the RNA-dependent RNA polymerase (RdRp) gene of various members of the family Narnaviridae, a single contig of approximately 1.2 kb was constructed. The genomic sequence was completed and phylogenetic analyses indicated that this virus represents a new member of the genus Mitovirus, for which the name of "Neofusicoccum luteum mitovirus 1" is proposed. The genome is 2,389 nucleotides long and, based on the fungal mitochondrial genetic code, it encodes a putative protein of 710 amino acids, homologous to the RdRps of members of the Narnaviridae family. The neofusicoccum luteus mitovirus 1 (NLMV1) RdRp contains the six conserved motifs previously reported for mitoviral RdRps. Our findings represent the first evidence that a mycovirus can infect N. luteum, an important pathogenic fungus of grapevine.

Indexed as

Genome, ViralAscomycotaFungal VirusesHigh-Throughput Nucleotide SequencingOpen Reading FramesPhylogenyPlant DiseasesRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, ViralRNA VirusesSequence Homology, Amino AcidViral ProteinsRNA-Dependent RNA PolymeraseRNA, Double-StrandedRNA, ViralViral Proteins

Identifiers

PMID28451899
PMCPMC5506512
OpenAlexW2609596827

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.