Evidence map›Paper›PMID 28450374›Full record

ArticleG3 (Bethesda, Md.)2017

Genetic Architecture of a Rice Nested Association Mapping Population.

Christopher A Fragoso, Maria Moreno, Zuoheng Wang, Christopher Heffelfinger, Lady J Arbelaez, John A Aguirre, Natalia Franco, Luz E Romero, Karine Labadie, Hongyu Zhao and 2 more

Abstract read
In one paragraph

Article in G3 (Bethesda, Md.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 33 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
33citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

33 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
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  13. Genotype imputation for soybean nested association mapping population to improve precision of QTL detection.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022
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  16. Development of anPlants (Basel, Switzerland) · 2021
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Christopher A FragosoProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06511.
Maria MorenoDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06511.
Zuoheng WangProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06511.
Christopher HeffelfingerDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06511.
Lady J ArbelaezRice Genetics and Genomics Laboratory, International Center for Tropical Agriculture, Cali 6713, Colombia.
John A AguirreRice Genetics and Genomics Laboratory, International Center for Tropical Agriculture, Cali 6713, Colombia.
Natalia FrancoRice Genetics and Genomics Laboratory, International Center for Tropical Agriculture, Cali 6713, Colombia.
Luz E RomeroRice Genetics and Genomics Laboratory, International Center for Tropical Agriculture, Cali 6713, Colombia.
Karine LabadieCommissariat à L'énergie Atomique et aux Énergies Alternatives, Institut de Génomique, Genoscope, 91000 Evry, France.
Hongyu ZhaoProgram in Computational Biology and Bioinformatics, Yale University, New Haven, Connecticut 06511.
Stephen L DellaportaDepartment of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, Connecticut 06511.
Mathias LorieuxRice Genetics and Genomics Laboratory, International Center for Tropical Agriculture, Cali 6713, Colombia mathias.lorieux@ird.fr m.lorieux@cgiar.org.

Funding

MEDICAL INFORMATICS RESEARCH TRAINING AT YALET15LM007056 · NLM · YALE UNIVERSITY · PI Mark Bender Gerstein, LUCILA OHNO-MACHADO · 1987 to 2026
$22.2M
YALE BIOMEDICAL SUPERCOMPUTER: NEUROSCIENCES10RR019895 · NCRR · YALE UNIVERSITY · PI WILLIAMS, KENNETH ROBERT · 2004 to 2004
$1.6M
High Performance Computing Instrumentation for Yale University Biomedical HPC CenS10RR029676 · NCRR · YALE UNIVERSITY · PI BJORNSON, ROBERT DEAN · 2011 to 2011
$588k
NCRR NIH HHS S10 RR019895NCRR NIH HHS S10 RR029676NLM NIH HHS T15 LM007056
6 · The paper itself

Abstract

Describing the genetic diversity in the gene pool of crops will provide breeders with novel resources for varietal improvement. Nested Association Mapping (NAM) populations are uniquely suited for characterizing parental diversity through the shuffling and fixation of parental haplotypes. Here, we describe a set of 1879 rice NAM lines created through the selfing and single-seed descent of F

Indexed as

Chromosome MappingGenetic Association StudiesCrosses, GeneticDatabases, Nucleic AcidGene FrequencyGenetic LinkageGenetics, PopulationGenetic VariationGenotypeOryzaPhenotypeQuantitative Trait, HeritableQuantitative Trait LociRecombination, Geneticcomputational biologygenetic mapsnested association mappingplant genomicsQTL mapping

Identifiers

PMID28450374
PMCPMC5473768

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.