Evidence map›Paper›PMID 28449087›Full record

ArticleNucleic acids research2017

Methyl-CpG binding domain protein 1 regulates localization and activity of Tet1 in a CXXC3 domain-dependent manner.

Peng Zhang, Cathia Rausch, Florian D Hastert, Boyana Boneva, Alina Filatova, Sujit J Patil, Ulrike A Nuber, Yu Gao, Xinyu Zhao, M Cristina Cardoso

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 36 citations in OpenAlex.

  1. Review
  2. Epigenetics-targeted drugs: current paradigms and future challenges.Signal transduction and targeted therapy · 2024
    Review
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  10. Article
  11. Proteins That Read DNA Methylation.Advances in experimental medicine and biology · 2022
    Article
  12. Article
  13. Article
  14. Article
  15. Epigenetic dynamics in cancer stem cell dormancy.Cancer metastasis reviews · 2020
    Review
  16. Article
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 2 countries.

Peng ZhangCell Biology and Epigenetics, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Cathia RauschCell Biology and Epigenetics, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Florian D HastertCell Biology and Epigenetics, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Boyana BonevaCell Biology and Epigenetics, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Alina FilatovaStem Cell and Developmental Biology, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Sujit J PatilCell Biology and Epigenetics, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Ulrike A NuberStem Cell and Developmental Biology, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Yu GaoWaisman Center & Department of Neuroscience, University of Wisconsin-Madison, Madison, WI 53705, USA.
Xinyu ZhaoWaisman Center & Department of Neuroscience, University of Wisconsin-Madison, Madison, WI 53705, USA.
M Cristina CardosoCell Biology and Epigenetics, Department of Biology, Technische Universität Darmstadt, Schnittspahnstrasse 10, 64287 Darmstadt, Germany.
Technical University of Darmstadt · DEUniversity of Wisconsin–Madison · US

Funding

Waisman Intellectual and Developmental Disabilities Research Center Down Syndrome RegistryU54HD090256 · NICHD · UNIVERSITY OF WISCONSIN-MADISON · PI MESSING, ALBEE · 2016 to 2020
$6.0M
Translational Regulation of Adult Neural Stem CellsR01MH078972 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI ZHAO, XINYU · 2007 to 2016
$4.3M
Role of small RNAs in NeurogenesisR01MH080434 · NIMH · UNIVERSITY OF WISCONSIN-MADISON · PI ZHAO, XINYU · 2007 to 2015
$2.9M
Coordinate actions between methyl-CpG binding proteins in neuronal developmentR21NS095632 · NINDS · UNIVERSITY OF WISCONSIN-MADISON · PI ZHAO, XINYU · 2015 to 2016
$418k
NICHD NIH HHS U54 HD090256NIMH NIH HHS R01 MH078972NIMH NIH HHS R01 MH080434NINDS NIH HHS R21 NS095632
6 · The paper itself

Abstract

Cytosine modifications diversify and structure the genome thereby controlling proper development and differentiation. Here, we focus on the interplay of the 5-methylcytosine reader Mbd1 and modifier Tet1 by analyzing their dynamic subcellular localization and the formation of the Tet oxidation product 5-hydroxymethylcytosine in mammalian cells. Our results demonstrate that Mbd1 enhances Tet1-mediated 5-methylcytosine oxidation. We show that this is due to enhancing the localization of Tet1, but not of Tet2 and Tet3 at heterochromatic DNA. We find that the recruitment of Tet1 and concomitantly its catalytic activity eventually leads to the displacement of Mbd1 from methylated DNA. Finally, we demonstrate that increased Tet1 heterochromatin localization and 5-methylcytosine oxidation are dependent on the CXXC3 domain of Mbd1, which recognizes unmethylated CpG dinucleotides. The Mbd1 CXXC3 domain deletion isoform, which retains only binding to methylated CpGs, on the other hand, blocks Tet1-mediated 5-methylcytosine to 5-hydroxymethylcytosine conversion, indicating opposite biological effects of Mbd1 isoforms. Our study provides new insights on how cytosine modifications, their modifiers and readers cross-regulate themselves.

Indexed as

CpG IslandsGene Expression Regulation5-MethylcytosineAnimalsCell LineDioxygenasesDNADNA-Binding ProteinsGenes, ReporterGreen Fluorescent ProteinsHEK293 CellsHeterochromatinHumansLuminescent ProteinsMiceMixed Function Oxygenases5-hydroxymethylcytosine5-MethylcytosineDioxygenasesDNADNA-Binding Proteinsenhanced green fluorescent proteinGreen Fluorescent ProteinsHeterochromatinLuminescent ProteinsMBD1 protein, humanMixed Function OxygenasesProto-Oncogene ProteinsRed Fluorescent ProteinTET1 protein, humanTET2 protein, humanTET3 protein, humanTranscription Factors

Identifiers

PMID28449087
PMCPMC5499542
OpenAlexW2609637792

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.