Evidence map›Paper›PMID 28448578›Full record

ArticlePLoS genetics2017

Evolutionary history of Tibetans inferred from whole-genome sequencing.

Hao Hu, Nayia Petousi, Gustavo Glusman, Yao Yu, Ryan Bohlender, Tsewang Tashi, Jonathan M Downie, Jared C Roach, Amy M Cole, Felipe R Lorenzo and 10 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
10.1field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 125 citations in OpenAlex.

  1. Review
  2. Variants ofLife science alliance · 2026
    Article
  3. Article
  4. Review
  5. Review
  6. Exploring the genetic footprints of high altitude adapted humans and livestock.Mammalian genome : official journal of the International Mammalian Genome Society · 2025
    Review
  7. Genetic adaptations shaping survival, pregnancy, and life at high altitude and sea level.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
    Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
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  15. Article
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  17. Article
  18. Article
  19. FunctionalScience advances · 2024
    Article
  20. Review

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

20 authors at 6 institutions in 3 countries.

Hao HuDepartment of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Nayia PetousiNuffield Department of Medicine, University of Oxford, Oxford, United Kingdom.
Gustavo GlusmanInstitute for Systems Biology, Seattle, Washington, United States of America.ORCID 0000-0001-8060-5955
Yao YuDepartment of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
Ryan BohlenderDepartment of Anthropology, University of Utah, Salt Lake City, Utah, United States of America.ORCID 0000-0002-6347-0494
Tsewang TashiDepartment of Medicine, University of Utah School of Medicine and George E. Wahlin Veterans Administration Medical Center, Salt Lake City, Utah, United States of America.ORCID 0000-0002-2785-866X
Jonathan M DownieDepartment of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America.ORCID 0000-0002-5424-4401
Jared C RoachInstitute for Systems Biology, Seattle, Washington, United States of America.
Amy M ColeDepartment of Molecular and Cellular Therapeutics, The Royal College of Surgeons in Ireland, Dublin, Ireland.
Felipe R LorenzoDepartment of Medicine, University of Utah School of Medicine and George E. Wahlin Veterans Administration Medical Center, Salt Lake City, Utah, United States of America.
Alan R RogersDepartment of Anthropology, University of Utah, Salt Lake City, Utah, United States of America.ORCID 0000-0003-3987-3346
Mary E BrunkowInstitute for Systems Biology, Seattle, Washington, United States of America.
Gianpiero CavalleriDepartment of Molecular and Cellular Therapeutics, The Royal College of Surgeons in Ireland, Dublin, Ireland.
Leroy HoodInstitute for Systems Biology, Seattle, Washington, United States of America.
Sama M AlpattySkaggs School of Pharmacy and Pharmaceutical Science, UC San Diego, La Jolla, California, United States of America.
Josef T PrchalDepartment of Medicine, University of Utah School of Medicine and George E. Wahlin Veterans Administration Medical Center, Salt Lake City, Utah, United States of America.
Lynn B JordeDepartment of Human Genetics, University of Utah, Salt Lake City, Utah, United States of America.
Peter A RobbinsDepartment of Physiology, Anatomy and Genetics, University of Oxford, Oxford, United Kingdom.ORCID 0000-0002-4975-0609
Tatum S SimonsonDepartment of Medicine, Division of Physiology, University of California San Diego, La Jolla, California, United States of America.
Chad D HuffDepartment of Epidemiology, University of Texas MD Anderson Cancer Center, Houston, Texas, United States of America.
University of Utah · USInstitute for Systems Biology · USThe University of Texas MD Anderson Cancer Center · USRoyal College of Surgeons in Ireland · IEUniversity of California San Diego · USUniversity of Oxford · GB

Funding

Tumor Evolution and Metastasis ProgramP30CA016672 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI Scott Kopetz · 1985 to 2026
$290.8M
Quantitative Systems BiologyP50GM076547 · NIGMS · INSTITUTE FOR SYSTEMS BIOLOGY · PI BALIGA, NITIN S · 2006 to 2016
$30.6M
R25 SUPPLEMENT IN GENETIC EPIDEMIOLOGY EDUCATIONR25CA057730 · NCI · UNIVERSITY OF TX MD ANDERSON CAN CTR · PI CHANG, SHINE · 1992 to 2016
$18.6M
POPULATION GENETICS OF MOBILE ELEMENTSR01GM059290 · NIGMS · UNIVERSITY OF UTAH · PI BATZER, MARK A, FESCHOTTE, CEDRIC · 1999 to 2018
$8.5M
Human Genetic Variation and DiseaseR35GM118335 · NIGMS · UTAH STATE HIGHER EDUCATION SYSTEM--UNIVERSITY OF UTAH · PI JORDE, LYNN · 2016 to 2025
$5.1M
VAAST+: Tool for variant prioritization, risk assessment and disease-gene findingR01GM104390 · NIGMS · UNIVERSITY OF UTAH · PI JORDE, LYNN, YANDELL, MARK DOUGLAS · 2013 to 2017
$2.2M
Integrating Physiology and Genomics to Reveal Functional Adaptation in High-Altitude TibetansR00HL118215 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN DIEGO · PI SIMONSON, TATUM S · 2015 to 2017
$744k
CSRD VA I01 CX001372NCI NIH HHS P30 CA016672NCI NIH HHS R25 CA057730NHLBI NIH HHS R00 HL118215NIGMS NIH HHS P50 GM076547NIGMS NIH HHS R01 GM059290NIGMS NIH HHS R01 GM104390NIGMS NIH HHS R35 GM118335Wellcome TrustWellcome Trust 089457/Z/09/Z
6 · The paper itself

Abstract

The indigenous people of the Tibetan Plateau have been the subject of much recent interest because of their unique genetic adaptations to high altitude. Recent studies have demonstrated that the Tibetan EPAS1 haplotype is involved in high altitude-adaptation and originated in an archaic Denisovan-related population. We sequenced the whole-genomes of 27 Tibetans and conducted analyses to infer a detailed history of demography and natural selection of this population. We detected evidence of population structure between the ancestral Han and Tibetan subpopulations as early as 44 to 58 thousand years ago, but with high rates of gene flow until approximately 9 thousand years ago. The CMS test ranked EPAS1 and EGLN1 as the top two positive selection candidates, and in addition identified PTGIS, VDR, and KCTD12 as new candidate genes. The advantageous Tibetan EPAS1 haplotype shared many variants with the Denisovan genome, with an ancient gene tree divergence between the Tibetan and Denisovan haplotypes of about 1 million years ago. With the exception of EPAS1, we observed no evidence of positive selection on Denisovan-like haplotypes.

Indexed as

Genome, HumanAdaptation, PhysiologicalAltitudeBasic Helix-Loop-Helix ProteinsCytochrome P-450 Enzyme SystemEndothelial PAS Domain-Containing Protein 1FemaleHaplotypesHigh-Throughput Nucleotide SequencingHumansHypoxia-Inducible Factor-Proline DioxygenasesMaleMolecular Sequence AnnotationProteinsReceptors, CalcitriolSelection, GeneticBasic Helix-Loop-Helix ProteinsCytochrome P-450 Enzyme SystemEGLN1 protein, humanEndothelial PAS Domain-Containing Protein 1Hypoxia-Inducible Factor-Proline DioxygenasesKCTD12 protein, humanProteinsPTGIS protein, humanReceptors, CalcitriolVDR protein, human

Identifiers

PMID28448578
PMCPMC5407610
OpenAlexW2608402327

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.