Evidence map›Paper›PMID 28448540›Full record

ArticlePloS one2017

Bruchid egg induced transcript dynamics in developing seeds of black gram (Vigna mungo).

Indrani K Baruah, Debashis Panda, Jagadale M V, Deba Jit Das, Sumita Acharjee, Priyabrata Sen, Bidyut Kumar Sarmah

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
1.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Indrani K BaruahDBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India.
Debashis PandaDistributed Information Centre, Department of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India.
Jagadale M VDBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India.
Deba Jit DasDBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India.
Sumita AcharjeeDBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India.
Priyabrata SenDepartment of Agricultural Biotechnology, Assam Agricultural University, Jorhat, Assam, India.
Bidyut Kumar SarmahDBT-AAU Centre, Assam Agricultural University, Jorhat, Assam, India.
Assam Agricultural University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Black gram (Vigna mungo) seeds are a rich source of digestible proteins, however, during storage these seeds are severely damaged by bruchids (Callosobruchus spp.), reducing seed quality and yield losses. Most of the cultivated genotypes of black gram are susceptible to bruchids, however, few tolerant genotypes have also been identified but the mechanism of tolerance is poorly understood. We employed Suppression Subtractive Hybridization (SSH) to identify specifically, but rarely expressed bruchid egg induced genes in black gram. In this study, Suppression Subtractive Hybridization (SSH) library was constructed to study the genes involved in defense response in black gram against bruchid infestation. An EST library of 277 clones was obtained for further analyses. Based on CAP3 assembly, 134 unigenes were computationally annotated using Blast2GOPRO software. In all, 20 defense related genes were subject to quantitative PCR analysis (qPCR) out of which 12 genes showed up-regulation in developing seeds of the pods oviposited by bruchids. Few major defense genes like defensin, pathogenesis related protein (PR), lipoxygenase (LOX) showed high expression levels in the oviposited population when compared with the non-oviposited plants. This is the first report on defense related gene transcript dynamics during the bruchid-black gram interaction using SSH library. This library would be useful to clone defense related gene(s) such as defensin as represented in our library for crop improvement.

Indexed as

AnimalsColeopteraGene OntologyMolecular Sequence AnnotationOvumReactive Oxygen SpeciesRNA, MessengerSeedsVignaReactive Oxygen SpeciesRNA, Messenger

Identifiers

PMID28448540
PMCPMC5407641
OpenAlexW2607707817

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.