ArticleScientific data2017
Construction of a map-based reference genome sequence for barley, Hordeum vulgare L.
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Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 90 papers, 1 of them a synthesis that pooled it.
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90citing papers in PubMed, 1 pooled it
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Who cites it
90 citing papers in PubMed, 1 synthesis or guideline pooled it, 158 citations in OpenAlex.
- Perennials as Future Grain Crops: Opportunities and Challenges.Frontiers in plant science · 2022Pooled it
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- A pangenome and pantranscriptome of hexaploid oat.Nature · 2026Article
- Gibberellin biosynthesis inFrontiers in plant science · 2026Article
- Developing pangenomes for large and complex plant genomes and their representation formats.Journal of advanced research · 2025Review
- Genetic analysis of the single internode dwarf 1 mutant in barley.BMC plant biology · 2025Article
- Comparative transcriptome analysis reveals candidate gene for flowering time QTL HvHeading in barley.BMC plant biology · 2025Article
- Development of cleaved amplified polymorphic sequence marker for powdery mildew resistance in Korean malting barley using QTL-seq.Frontiers in plant science · 2025Article
- Genome-wide association of an organic naked barley diversity panel identified quantitative trait loci for disease resistance.The plant genome · 2024Article
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- Fine mapping and candidate gene mining of QSc/Sl.cib-7H for spike compactness and length and its pleiotropic effects on yield-related traits in barley (Hordeum vulgare L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Unlocking plant genetics with telomere-to-telomere genome assemblies.Nature genetics · 2024Review
- Global identification of LIM genes in response to different heat stress regimes in Lactuca sativa.BMC plant biology · 2024Article
- Characterizing subgenome recombination and chromosomal imbalances in banana varietal lineages.Annals of botany · 2024Article
- The improvement of the in vitro plant regeneration in barley with the epigenetic modifier of histone acetylation, trichostatin A.Journal of applied genetics · 2024Article
- Helical coiling of metaphase chromatids.Nucleic acids research · 2023Article
- Pangenomic analysis identifies structural variation associated with heat tolerance in pearl millet.Nature genetics · 2023Article
30 more citing papers are in PubMed but not listed here.
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Authors and funding
60 authors at 20 institutions in 10 countries.
Sebastian BeierLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.ORCID 0000-0002-2177-8781
Axel HimmelbachLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.
Christian ColmseeLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.
Xiao-Qi ZhangSchool of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia 6150, Australia.
Roberto A BarreroCentre for Comparative Genomics, Murdoch University, Murdoch, Western Australia 6150, Australia.ORCID 0000-0002-7735-665X
Qisen ZhangAustralian Export Grains Innovation Centre, South Perth, Western Australia 6151, Australia.
Lin LiDepartment of Agronomy and Plant Genetics, University of Minnesota, St Paul, Minnesota 55108, USA.
Micha BayerThe James Hutton Institute, Dundee DD2 5DA, UK.ORCID 0000-0003-0041-3115
Daniel BolserEuropean Molecular Biology Laboratory-The European Bioinformatics Institute, Hinxton CB10 1SD, UK.
Stefan TaudienLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), 07745 Jena, Germany.
Marco GrothLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), 07745 Jena, Germany.
Marius FelderLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), 07745 Jena, Germany.
Alex HastieBioNano Genomics Inc., San Diego, California 92121, USA.
Hana ŠimkováInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, 78371 Olomouc, Czech Republic.
Helena StaňkováInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, 78371 Olomouc, Czech Republic.
Jan VránaInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, 78371 Olomouc, Czech Republic.
Saki ChanBioNano Genomics Inc., San Diego, California 92121, USA.
María Muñoz-AmatriaínDepartment of Botany &Plant Sciences, University of California, Riverside, Riverside, California 92521, USA.
Rachid OunitDepartment of Computer Science and Engineering, University of California, Riverside, Riverside, California 92521, USA.
Steve WanamakerDepartment of Botany &Plant Sciences, University of California, Riverside, Riverside, California 92521, USA.
Thomas SchmutzerLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.ORCID 0000-0003-1073-6719
Lala Aliyeva-SchnorrLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.
Stefano GrassoDepartment of Agricultural and Environmental Sciences, University of Udine, 33100 Udine, Italy.ORCID 0000-0002-6958-9912
Jaakko TanskanenGreen Technology, Natural Resources Institute (Luke), Viikki Plant Science Centre, and Institute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland.
Dharanya SampathEarlham Institute, Norwich NR4 7UH, UK.
Darren HeavensEarlham Institute, Norwich NR4 7UH, UK.
Sujie CaoBGI-Shenzhen, Shenzhen 518083, China.
Brett ChapmanCentre for Comparative Genomics, Murdoch University, Murdoch, Western Australia 6150, Australia.
Fei DaiCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
Yong HanCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
Hua LiBGI-Shenzhen, Shenzhen 518083, China.
Xuan LiBGI-Shenzhen, Shenzhen 518083, China.
Chongyun LinBGI-Shenzhen, Shenzhen 518083, China.
John K McCookeCentre for Comparative Genomics, Murdoch University, Murdoch, Western Australia 6150, Australia.
Cong TanCentre for Comparative Genomics, Murdoch University, Murdoch, Western Australia 6150, Australia.
Songbo WangBGI-Shenzhen, Shenzhen 518083, China.
Shuya YinCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
Gaofeng ZhouSchool of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia 6150, Australia.
Jesse A PolandKansas State University, Wheat Genetics Resource Center, Department of Plant Pathology and Department of Agronomy, Manhattan, Kansas 66506, USA.
Matthew I BellgardCentre for Comparative Genomics, Murdoch University, Murdoch, Western Australia 6150, Australia.
Andreas HoubenLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.
Jaroslav DoleželInstitute of Experimental Botany, Centre of the Region Haná for Biotechnological and Agricultural Research, 78371 Olomouc, Czech Republic.ORCID 0000-0002-6263-0492
Sarah AylingEarlham Institute, Norwich NR4 7UH, UK.
Stefano LonardiDepartment of Computer Science and Engineering, University of California, Riverside, Riverside, California 92521, USA.
Peter LangridgeSchool of Agriculture, University of Adelaide, Urrbrae, South Australia 5064, Australia.
Gary J MuehlbauerDepartment of Agronomy and Plant Genetics, University of Minnesota, St Paul, Minnesota 55108, USA.
Paul KerseyEuropean Molecular Biology Laboratory-The European Bioinformatics Institute, Hinxton CB10 1SD, UK.
Matthew D ClarkEarlham Institute, Norwich NR4 7UH, UK.
Mario CaccamoEarlham Institute, Norwich NR4 7UH, UK.
Alan H SchulmanGreen Technology, Natural Resources Institute (Luke), Viikki Plant Science Centre, and Institute of Biotechnology, University of Helsinki, 00014 Helsinki, Finland.ORCID 0000-0002-4126-6177
Matthias PlatzerLeibniz Institute on Aging-Fritz Lipmann Institute (FLI), 07745 Jena, Germany.ORCID 0000-0003-0596-8582
Timothy J CloseDepartment of Botany &Plant Sciences, University of California, Riverside, Riverside, California 92521, USA.
Mats HanssonDepartment of Biology, Lund University, 22362 Lund, Sweden.
Guoping ZhangCollege of Agriculture and Biotechnology, Zhejiang University, Hangzhou 310058, China.
Ilka BraumannCarlsberg Research Laboratory, 1799 Copenhagen, Denmark.
Chengdao LiSchool of Veterinary and Life Sciences, Murdoch University, Murdoch, Western Australia 6150, Australia.
Robbie WaughThe James Hutton Institute, Dundee DD2 5DA, UK.ORCID 0000-0003-1045-3065
Uwe ScholzLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.ORCID 0000-0001-6113-3518
Nils SteinLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.ORCID 0000-0003-3011-8731
Martin MascherLeibniz Institute of Plant Genetics and Crop Plant Research (IPK) Gatersleben, 06466 Seeland, Germany.
Murdoch University · AULeibniz-Institut für Pflanzengenetik und Kulturpflanzenforschung (IPK) · DEBGI Group (China) · CNUniversity of California, Riverside · USCentre of the Region Haná for Biotechnical and Agricultural Research · CZLeibniz Institute on Aging - Fritz Lipmann Institute (FLI) · DEZhejiang University · CNEarlham Institute · GBBioNano Genomics (United States) · USEuropean Bioinformatics Institute · GBJames Hutton Institute · GBUniversity of Helsinki · FIUniversity of Minnesota · USAustralian Export Grains Innovation Centre · AUCarlsberg Laboratory · DKGerman Centre for Integrative Biodiversity Research · DEKansas State University · USLund University · SENational Institute of Agricultural Botany · GBThe University of Western Australia · AU
Funding
Biotechnology and Biological Sciences Research Council BB/H531519/1
Abstract
Barley (Hordeum vulgare L.) is a cereal grass mainly used as animal fodder and raw material for the malting industry. The map-based reference genome sequence of barley cv. 'Morex' was constructed by the International Barley Genome Sequencing Consortium (IBSC) using hierarchical shotgun sequencing. Here, we report the experimental and computational procedures to (i) sequence and assemble more than 80,000 bacterial artificial chromosome (BAC) clones along the minimum tiling path of a genome-wide physical map, (ii) find and validate overlaps between adjacent BACs, (iii) construct 4,265 non-redundant sequence scaffolds representing clusters of overlapping BACs, and (iv) order and orient these BAC clusters along the seven barley chromosomes using positional information provided by dense genetic maps, an optical map and chromosome conformation capture sequencing (Hi-C). Integrative access to these sequence and mapping resources is provided by the barley genome explorer (BARLEX).
Indexed as
Genome, PlantChromosome MappingHordeumSequence Analysis
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