Evidence map›Paper›PMID 28448050›Full record

ArticleJournal of visualized experiments : JoVE2017

Single Molecule Analysis of Laser Localized Psoralen Adducts.

Jing Huang, Himabindu Gali, Julia Gichimu, Marina A Bellani, Durga Pokharel, Manikandan Paramasivam, Michael M Seidman

Abstract readVideo-Audio Media
In one paragraph

Article in Journal of visualized experiments : JoVE, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact, top 97% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed, 0 citations in OpenAlex.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Jing HuangLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health.
Himabindu GaliLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health.
Julia GichimuLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health.
Marina A BellaniLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health.
Durga PokharelLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health.
Manikandan ParamasivamLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health.
Michael M SeidmanLaboratory of Molecular Gerontology, National Institute on Aging, National Institutes of Health; SeidmanM@grc.nia.nih.gov.
National Institute on Aging · USNational Institutes of Health · US

Funding

Repair of localized DNA damageZIAAG000746 · NIA · NATIONAL INSTITUTE ON AGING · PI SEIDMAN, MICHAEL · 2009 to 2025
$30.0M
Repair of localized DNA damageZ01AG000746 · NIA · NATIONAL INSTITUTE ON AGING · PI SEIDMAN, MICHAEL · 2007 to 2008
$607k
Intramural NIH HHS Z01 AG000746
6 · The paper itself

Abstract

The DNA Damage Response (DDR) has been extensively characterized in studies of double strand breaks (DSBs) induced by laser micro beam irradiation in live cells. The DDR to helix distorting covalent DNA modifications, including interstrand DNA crosslinks (ICLs), is not as well defined. We have studied the DDR stimulated by ICLs, localized by laser photoactivation of immunotagged psoralens, in the nuclei of live cells. In order to address fundamental questions about adduct distribution and replication fork encounters, we combined laser localization with two other technologies. DNA fibers are often used to display the progress of replication forks by immunofluorescence of nucleoside analogues incorporated during short pulses. Immunoquantum dots have been widely employed for single molecule imaging. In the new approach, DNA fibers from cells carrying laser localized ICLs are spread onto microscope slides. The tagged ICLs are displayed with immunoquantum dots and the inter-lesion distances determined. Replication fork collisions with ICLs can be visualized and different encounter patterns identified and quantitated.

Indexed as

LasersCell LineDNADNA AdductsDNA Breaks, Double-StrandedDNA DamageFluorescent Antibody TechniqueFurocoumarinsHumansMicroscopy, ConfocalMicroscopy, FluorescenceQuantum DotsSingle Molecule ImagingDNADNA AdductsFurocoumarins

Identifiers

PMID28448050
PMCPMC5565071
OpenAlexW2606065557

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.