Evidence map›Paper›PMID 28447196›Full record

ArticleMolecular genetics and genomics : MGG2017

The axon degeneration gene SARM1 is evolutionarily distinct from other TIR domain-containing proteins.

Harsha Malapati, Spencer M Millen, William J Buchser

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Article in Molecular genetics and genomics : MGG, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Harsha MalapatiDepartment of Biology, College of William & Mary, 540 Landrum Dr., Williamsburg, VA, USA.
Spencer M MillenNeuroscience Program, College of William & Mary, Williamsburg, VA, USA.
William J BuchserDepartment of Biology, College of William & Mary, 540 Landrum Dr., Williamsburg, VA, USA. wjbuchser@wm.edu.
William & Mary · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Many forms of neurodegenerative disease are characterized by Wallerian degeneration, an active program of axonal destruction. Recently, the important player which enacts Wallerian degeneration was discovered, the multidomain protein SARM1. Since the SARM1 protein has classically been thought of as an innate immune molecule, its role in Wallerian degeneration has raised questions on the evolutionary forces acting on it. Here, we synthesize a picture of SARM1's evolution through various organisms by examining the molecular and genetic changes of SARM1 and the genes around it. Using proteins that possess domains homologous to SARM1, we established distances and Ka/Ks values through 5671 pairwise species-species comparisons. We demonstrate that SARM1 diverged across species in a pattern similar to other SAM domain-containing proteins. This is surprising, because it was expected that SARM1 would behave more like its TIR domain relatives. Going along with this divorce from TIR, we also noted that SARM1's TIR is under stronger purifying selection than the rest of the TIR domain-containing proteins (remaining highly conserved). In addition, SARM1's synteny analysis reveals that the surrounding gene cluster is highly conserved, functioning as a potential nexus of gene functionality across species. Taken together, SARM1 demonstrates a unique evolutionary pattern, separate from the TIR domain protein family.

Indexed as

Amino Acid SequenceAnimalsArmadillo Domain ProteinsAxonsBase CompositionBiological EvolutionCytoskeletal ProteinsDatabases, GeneticEaglesEsocidaeHorsesWallerian DegenerationArmadillo Domain ProteinsCytoskeletal ProteinsAvianInnate immuneNeuroscienceSyntenyWallerian axon degeneration

Identifiers

PMID28447196
OpenAlexW2609658177

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.