Evidence map›Paper›PMID 28446609›Full record

ArticleThe Journal of biological chemistry2017

Glycosylation of the core of the HIV-1 envelope subunit protein gp120 is not required for native trimer formation or viral infectivity.

Ujjwal Rathore, Piyali Saha, Sannula Kesavardhana, Aditya Arun Kumar, Rohini Datta, Sivasankar Devanarayanan, Raksha Das, John R Mascola, Raghavan Varadarajan

Abstract read
In one paragraph

Article in The Journal of biological chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed.

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  17. A facile method of mapping HIV-1 neutralizing epitopes using chemically masked cysteines and deep sequencing.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. Visualization of the HIV-1 Env glycan shield across scales.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Ujjwal RathoreFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India.
Piyali SahaFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India.
Sannula KesavardhanaFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India.
Aditya Arun KumarFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India.
Rohini DattaFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India.
Sivasankar DevanarayananFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India.
Raksha DasFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India.
John R Mascolathe Vaccine Research Center, NIAID, National Institutes of Health, Bethesda, Maryland 20814, and.
Raghavan VaradarajanFrom the Molecular Biophysics Unit, Indian Institute of Science, 560012 Bangalore, India, varadar@mbu.iisc.ernet.in.

Funding

HIV-1 envelope structure, stability and dynamics probed by saturation mutagenesisR01AI118366 · NIAID · INDIAN INSTITUTE OF SCIENCE · PI VARADARAJAN, RAGHAVAN · 2015 to 2019
$607k
NIAID NIH HHS R01 AI118366
6 · The paper itself

Abstract

The gp120 subunit of the HIV-1 envelope (Env) protein is heavily glycosylated at ∼25 glycosylation sites, of which ∼7-8 are located in the V1/V2 and V3 variable loops and the others in the remaining core gp120 region. Glycans partially shield Env from recognition by the host immune system and also are believed to be indispensable for proper folding of gp120 and for viral infectivity. Previous attempts to alter glycosylation sites in Env typically involved mutating the glycosylated asparagine residues to structurally similar glutamines or alanines. Here, we confirmed that such mutations at multiple glycosylation sites greatly diminish viral infectivity and result in significantly reduced binding to both neutralizing and non-neutralizing antibodies. Therefore, using an alternative approach, we combined evolutionary information with structure-guided design and yeast surface display to produce properly cleaved HIV-1 Env variants that lack all 15 core gp120 glycans, yet retain conformational integrity and multiple-cycle viral infectivity and bind to several broadly neutralizing antibodies (bNAbs), including trimer-specific antibodies and a germline-reverted version of the bNAb VRC01. Our observations demonstrate that core gp120 glycans are not essential for folding, and hence their likely primary role is enabling immune evasion. We also show that our glycan removal approach is not strain restricted. Glycan-deficient Env derivatives can be used as priming immunogens because they should engage and activate a more divergent set of germlines than fully glycosylated Env. In conclusion, these results clarify the role of core gp120 glycosylation and illustrate a general method for designing glycan-free folded protein derivatives.

Indexed as

Immune EvasionModels, MolecularProtein Processing, Post-TranslationalAmino Acid SubstitutionAntibodies, NeutralizingAntibodies, ViralAntibody SpecificityAsparagineGlycosylationHIV-1HIV Envelope Protein gp120HIV Envelope Protein gp41HumansMutagenesis, Site-DirectedMutationPeptide FragmentsAntibodies, NeutralizingAntibodies, ViralAsparaginegp120 protein, Human immunodeficiency virus 1gp41 protein, Human immunodeficiency virus 1HIV Envelope Protein gp120HIV Envelope Protein gp41Peptide FragmentsRecombinant Proteinsgermline antibody bindinghuman immunodeficiency virus (HIV)immune evasionnative trimerN-linked glycosylationprotein designprotein foldingvaccine developmentviral infectivity

Identifiers

PMID28446609
PMCPMC5473224

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.