Evidence map›Paper›PMID 28444369›Full record

ArticleAnnals of botany2017

Three-dimensional intracellular structure of a whole rice mesophyll cell observed with FIB-SEM.

Takao Oi, Sakiko Enomoto, Tomoyo Nakao, Shigeo Arai, Koji Yamane, Mitsutaka Taniguchi

Open access · bronzeAbstract read
In one paragraph

Article in Annals of botany, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
1.7field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 61 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Takao OiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Sakiko EnomotoHigh Voltage Electron Microscope Laboratory, Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8601, Japan.
Tomoyo NakaoHigh Voltage Electron Microscope Laboratory, Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8601, Japan.
Shigeo AraiHigh Voltage Electron Microscope Laboratory, Institute of Materials and Systems for Sustainability, Nagoya University, Nagoya 464-8601, Japan.
Koji YamaneFaculty of Agriculture, Kindai University, Nara 631-8505, Japan.
Mitsutaka TaniguchiGraduate School of Bioagricultural Sciences, Nagoya University, Nagoya 464-8601, Japan.
Nagoya University · JPKindai University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background and Aims: Ultrathin sections of rice leaf blades observed two-dimensionally using a transmission electron microscope (TEM) show that the chlorenchyma is composed of lobed mesophyll cells, with intricate cell boundaries, and lined with chloroplasts. The lobed cell shape and chloroplast positioning are believed to enhance the area available for the gas exchange surface for photosynthesis in rice leaves. However, a cell image revealing the three-dimensional (3-D) ultrastructure of rice mesophyll cells has not been visualized. In this study, a whole rice mesophyll cell was observed using a focused ion beam scanning electron microscope (FIB-SEM), which provides many serial sections automatically, rapidly and correctly, thereby enabling 3-D cell structure reconstruction. Methods: Rice leaf blades were fixed chemically using the method for conventional TEM observation, embedded in resin and subsequently set in the FIB-SEM chamber. Specimen blocks were sectioned transversely using the FIB, and block-face images were captured using the SEM. The sectioning and imaging were repeated overnight for 200-500 slices (each 50 nm thick). The resultant large-volume image stacks ( x = 25 μm, y = 25 μm, z = 10-25 μm) contained one or two whole mesophyll cells. The 3-D models of whole mesophyll cells were reconstructed using image processing software. Key Results: The reconstructed cell models were discoid shaped with several lobes around the cell periphery. The cell shape increased the surface area, and the ratio of surface area to volume was twice that of a cylinder having the same volume. The chloroplasts occupied half the cell volume and spread as sheets along the cell lobes, covering most of the inner cell surface, with adjacent chloroplasts in close contact with each other. Conclusions: Cellular and sub-cellular ultrastructures of a whole mesophyll cell in a rice leaf blade are demonstrated three-dimensionally using a FIB-SEM. The 3-D models and numerical information support the hypothesis that rice mesophyll cells enhance their CO 2 absorption with increased cell surface and sheet-shaped chloroplasts.

Indexed as

Microscopy, Electron, ScanningCell ShapeChloroplastsImage Processing, Computer-AssistedImaging, Three-DimensionalMesophyll CellsOryzaChloroplastfocused ion beam scanning electron microscopemesophyll cell, Oryza sativa L.serial-sectioning electron microscopythree-dimensional reconstructionultrastructure

Identifiers

PMID28444369
PMCPMC5577905
OpenAlexW2607037660

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.