Evidence map›Paper›PMID 28442745›Full record

ArticleScientific reports2017

Phosphorylation of the mitochondrial autophagy receptor Nix enhances its interaction with LC3 proteins.

Vladimir V Rogov, Hironori Suzuki, Mija Marinković, Verena Lang, Ryuichi Kato, Masato Kawasaki, Maja Buljubašić, Matilda Šprung, Natalia Rogova, Soichi Wakatsuki and 5 more

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 188 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
188citing papers in PubMed, 1 pooled it
13.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

188 citing papers in PubMed, 1 synthesis or guideline pooled it, 284 citations in OpenAlex.

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  8. Regulation and roles of mammalian mitophagy.Nature reviews. Molecular cell biology · 2026
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128 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 5 countries.

Vladimir V RogovInstitute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University, D-60438, Frankfurt, Germany.ORCID http://orcid.org/0000-0002-2164-2323
Hironori SuzukiBiomolecular Interaction Centre, School of Biological Sciences, University of Canterbury, Christchurch, 8020, New Zealand.
Mija MarinkovićSchool of Medicine, University of Split, Šoltanska 2, HR-21000, Split, Croatia.
Verena LangLysosomal Systems Biology, German Cancer Research Center (DKFZ), Bioquant, Im Neuenheimer Feld 267, D-69120, Heidelberg, Germany.
Ryuichi KatoStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan.
Masato KawasakiStructural Biology Research Center, Photon Factory, Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki, 305-0801, Japan.
Maja BuljubašićSchool of Medicine, University of Split, Šoltanska 2, HR-21000, Split, Croatia.
Matilda ŠprungFaculty of Science, University of Split, Ruđera Boškovića 33, HR-21000, Split, Croatia.
Natalia RogovaInstitute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University, D-60438, Frankfurt, Germany.
Soichi WakatsukiStructural Biology (School of Medicine), Beckman Center B105, 279 Campus Drive, Stanford, CA, 94305-5126, USA.
Anne Hamacher-BradyLysosomal Systems Biology, German Cancer Research Center (DKFZ), Bioquant, Im Neuenheimer Feld 267, D-69120, Heidelberg, Germany.
Volker DötschInstitute of Biophysical Chemistry and Center for Biomolecular Magnetic Resonance, Goethe University, D-60438, Frankfurt, Germany. vdoetsch@em.uni-frankfurt.de.
Ivan DikicSchool of Medicine, University of Split, Šoltanska 2, HR-21000, Split, Croatia.ORCID http://orcid.org/0000-0001-8156-9511
Nathan R BradyW. Harry Feinstone Department of Molecular Microbiology & Immunology, Johns Hopkins University Bloomberg School of Public Health, Baltimore, MD, USA.
Ivana NovakSchool of Medicine, University of Split, Šoltanska 2, HR-21000, Split, Croatia. ivana.novak@mefst.hr.
Goethe University Frankfurt · DEUniversity of Split · HRHigh Energy Accelerator Research Organization · JPJohns Hopkins University · USGerman Cancer Research Center · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The mitophagy receptor Nix interacts with LC3/GABARAP proteins, targeting mitochondria into autophagosomes for degradation. Here we present evidence for phosphorylation-driven regulation of the Nix:LC3B interaction. Isothermal titration calorimetry and NMR indicate a ~100 fold enhanced affinity of the serine 34/35-phosphorylated Nix LC3-interacting region (LIR) to LC3B and formation of a very rigid complex compared to the non-phosphorylated sequence. Moreover, the crystal structure of LC3B in complex with the Nix LIR peptide containing glutamic acids as phosphomimetic residues and NMR experiments revealed that LIR phosphorylation stabilizes the Nix:LC3B complex via formation of two additional hydrogen bonds between phosphorylated serines of Nix LIR and Arg11, Lys49 and Lys51 in LC3B. Substitution of Lys51 to Ala in LC3B abrogates binding of a phosphomimetic Nix mutant. Functionally, serine 34/35 phosphorylation enhances autophagosome recruitment to mitochondria in HeLa cells. Together, this study provides cellular, biochemical and biophysical evidence that phosphorylation of the LIR domain of Nix enhances mitophagy receptor engagement.

Indexed as

AutophagyProtein Processing, Post-TranslationalCalorimetryCrystallography, X-RayHeLa CellsHumansMagnetic Resonance SpectroscopyMembrane ProteinsMicrotubule-Associated ProteinsMitochondriaModels, MolecularPhosphorylationProtein BindingProtein ConformationProto-Oncogene ProteinsTumor Suppressor ProteinsBNIP3L protein, humanMAP1LC3B protein, humanMembrane ProteinsMicrotubule-Associated ProteinsProto-Oncogene ProteinsTumor Suppressor Proteins

Identifiers

PMID28442745
PMCPMC5430633
OpenAlexW2605825818

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.