Evidence map›Paper›PMID 28442501›Full record

ArticlePlant physiology2017

ChloroKB: A Web Application for the Integration of Knowledge Related to Chloroplast Metabolic Network.

Pauline Gloaguen, Sylvain Bournais, Claude Alban, Stéphane Ravanel, Daphné Seigneurin-Berny, Michel Matringe, Marianne Tardif, Marcel Kuntz, Myriam Ferro, Christophe Bruley and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. The Main Functions of Plastids.Methods in molecular biology (Clifton, N.J.) · 2024
    Review
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  6. Article
  7. Is there a role for tau glutathione transferases in tetrapyrrole metabolism and retrograde signalling in plants?Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2020
    Article
  8. Article
  9. Review
  10. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Pauline GloaguenLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Sylvain BournaisLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).ORCID http://orcid.org/0000-0001-8383-6580
Claude AlbanLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Stéphane RavanelLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Daphné Seigneurin-BernyLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Michel MatringeLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Marianne TardifLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).ORCID http://orcid.org/0000-0003-4438-8281
Marcel KuntzLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).ORCID http://orcid.org/0000-0002-5637-5202
Myriam FerroLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Christophe BruleyLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Norbert RollandLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.).
Yves VandenbrouckLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.) yves.vandenbrouck@cea.fr gilles.curien@cea.fr.
Gilles CurienLaboratoire de Biologie à Grande Echelle (BGE), CEA, INSERM, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (P.G., S.B., M.T., M.F., C.B, Y.V.); Laboratoire de Physiologie Cellulaire et Végétale (LPCV), CNRS, CEA, INRA, BIG, Université Grenoble-Alpes, 38000, Grenoble, France (C.A., S.R., D.S.-B., M.M., M.K., N.R., G.C.) yves.vandenbrouck@cea.fr gilles.curien@cea.fr.ORCID http://orcid.org/0000-0002-5361-2399
Centre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Higher plants, as autotrophic organisms, are effective sources of molecules. They hold great promise for metabolic engineering, but the behavior of plant metabolism at the network level is still incompletely described. Although structural models (stoichiometry matrices) and pathway databases are extremely useful, they cannot describe the complexity of the metabolic context, and new tools are required to visually represent integrated biocurated knowledge for use by both humans and computers. Here, we describe ChloroKB, a Web application (http://chlorokb.fr/) for visual exploration and analysis of the Arabidopsis (

Indexed as

InternetKnowledge BasesMetabolic Networks and PathwaysArabidopsisChloroplastsSubcellular Fractions

Identifiers

PMID28442501
PMCPMC5462031
OpenAlexW2607951264

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.