Evidence map›Paper›PMID 28442262›Full record

ArticleBioorganic & medicinal chemistry2017

An integrated chemical biology approach reveals the mechanism of action of HIV replication inhibitors.

Nicholas Pagano, Peter Teriete, Margrith E Mattmann, Li Yang, Beth A Snyder, Zhaohui Cai, Marintha L Heil, Nicholas D P Cosford

Abstract read
In one paragraph

Article in Bioorganic & medicinal chemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Targeting Breast Cancer: Novel Dihydropyrimidinones As Potent Eg5 Inhibitors.Medicinal chemistry (Shariqah (United Arab Emirates)) · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Automating drug discovery.Nature reviews. Drug discovery · 2018
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Nicholas PaganoCancer Metabolism & Signaling Networks Program, Sanford Burnham Prebys Medical Discovery Institute, 10901 N. Torrey Pines Rd., La Jolla, CA 92037, United States.
Peter TerieteCancer Metabolism & Signaling Networks Program, Sanford Burnham Prebys Medical Discovery Institute, 10901 N. Torrey Pines Rd., La Jolla, CA 92037, United States.
Margrith E MattmannCancer Metabolism & Signaling Networks Program, Sanford Burnham Prebys Medical Discovery Institute, 10901 N. Torrey Pines Rd., La Jolla, CA 92037, United States.
Li YangCancer Metabolism & Signaling Networks Program, Sanford Burnham Prebys Medical Discovery Institute, 10901 N. Torrey Pines Rd., La Jolla, CA 92037, United States.
Beth A SnyderSouthern Research Institute, Drug Development Division, 431 Aviation Way, Frederick, MD 21701, United States.
Zhaohui CaiSouthern Research Institute, Drug Development Division, 431 Aviation Way, Frederick, MD 21701, United States.
Marintha L HeilSouthern Research Institute, Drug Development Division, 431 Aviation Way, Frederick, MD 21701, United States.
Nicholas D P CosfordCancer Metabolism & Signaling Networks Program, Sanford Burnham Prebys Medical Discovery Institute, 10901 N. Torrey Pines Rd., La Jolla, CA 92037, United States. Electronic address: ncosford@sbpdiscovery.org.

Funding

Sanford-Burnham Center for Chemical GenomicsU54HG005033 · NHGRI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI JACKSON, MICHAEL · 2008 to 2012
$72.5M
Countermeasures for Bioterroism Targeting Cellular Host FactorsU01AI078048 · NIAID · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI REED, JOHN C · 2008 to 2012
$4.0M
Drug Discovery for Fatty Acid Synthase in OncologyR01CA140427 · NCI · SANFORD BURNHAM PREBYS MEDICAL DISCOVERY INSTITUTE · PI SMITH, JEFFREY W · 2010 to 2014
$2.5M
Stereochemically /Structurally Diverse Pilot Scale LibraP41GM079590 · NIGMS · TORREY PINES INST FOR MOLECULAR STUDIES · PI HOUGHTEN, RICHARD ALLEN · 2006 to 2009
$1.5M
Highly Diverse and Structurally Varied Heterocyclic Libraries for the MLSMRP41GM081261 · NIGMS · TORREY PINES INST FOR MOLECULAR STUDIES · PI HOUGHTEN, RICHARD ALLEN · 2007 to 2009
$1.4M
NCI NIH HHS R01 CA140427NHGRI NIH HHS U54 HG005033NIAID NIH HHS U01 AI078048NIGMS NIH HHS P41 GM079590NIGMS NIH HHS P41 GM081261
6 · The paper itself

Abstract

Continuous flow (microfluidic) chemistry was employed to prepare a small focused library of dihydropyrimidinone (DHPM) derivatives. Compounds in this class have been reported to exhibit activity against the human immunodeficiency virus (HIV), but their molecular target had not been identified. We tested the initial set of DHPMs in phenotypic assays providing a hit (1i) that inhibited the replication of the human immunodeficiency virus HIV in cells. Flow chemistry-driven optimization of 1i led to the identification of HIV replication inhibitors such as 1l with cellular potency comparable with the clinical drug nevirapine (NVP). Mechanism of action (MOA) studies using cellular and biochemical assays coupled with 3D fingerprinting and in silico modeling demonstrated that these drug-like probe compounds exert their effects by inhibiting the viral reverse transcriptase polymerase (RT). This led to the design and synthesis of the novel DHPM 1at that inhibits the replication of drug resistant strains of HIV. Our work demonstrates that combining flow chemistry-driven analogue refinement with phenotypic assays, in silico modeling and MOA studies is a highly effective strategy for hit-to-lead optimization applicable to the discovery of future therapeutic agents.

Indexed as

Binding SitesCells, CulturedGenotypeHalf-LifeHIV-1HIV Reverse TranscriptaseHumansInhibitory Concentration 50MicrofluidicsMicrosomesMolecular ConformationMolecular Docking SimulationPyrimidinonesReverse Transcriptase InhibitorsStereoisomerismVirus ReplicationHIV Reverse TranscriptasePyrimidinonesReverse Transcriptase InhibitorsDihydropyrimidinoneFlow chemistryHIVMicroreactorsMultistep synthesisNNRTIResistant virus activity

Identifiers

PMID28442262
PMCPMC6145176

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.