Evidence map›Paper›PMID 28441502›Full record

ArticleBiochemistry2017

Differential Coupling of Binding, ATP Hydrolysis, and Transport of Fluorescent Probes with P-Glycoprotein in Lipid Nanodiscs.

Mavis Jiarong Li, Abhinav Nath, William M Atkins

Open access · greenAbstract readComparative Study
In one paragraph

Article in Biochemistry, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 24 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Preparation of Lipid Nanodiscs with Lipid Mixtures.Current protocols in protein science · 2019
    Article
  9. Article
  10. Article
  11. Article
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Mavis Jiarong LiDepartment of Medicinal Chemistry, University of Washington , Box 357610, Seattle, Washington 98195-7610, United States.
Abhinav NathDepartment of Medicinal Chemistry, University of Washington , Box 357610, Seattle, Washington 98195-7610, United States.
William M AtkinsDepartment of Medicinal Chemistry, University of Washington , Box 357610, Seattle, Washington 98195-7610, United States.ORCID 0000-0002-3173-0175
University of Washington · US

Funding

Pharmacological Sciences SupplementT32GM007750 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 1985 to 2023
$12.6M
Functional Dynamics of P-glycoproteinR01GM121603 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 2017 to 2020
$1.2M
Molecular Mechanisms of P-GlycoproteinR01GM098457 · NIGMS · UNIVERSITY OF WASHINGTON · PI ATKINS, WILLIAM M · 2011 to 2014
$1.1M
NIGMS NIH HHS R01 GM098457NIGMS NIH HHS R01 GM121603
6 · The paper itself

Abstract

The ATP binding cassette transporter P-glycoprotein (ABCB1 or P-gp) plays a major role in cellular resistance to drugs and drug interactions. Experimental studies support a mechanism with nucleotide-dependent fluctuation between inward-facing and outward-facing conformations, which are coupled to nucleotide hydrolysis. However, detailed insight into drug-dependent modulation of these conformational ensembles is lacking. Different drugs likely occupy partially overlapping but distinct sites and are therefore variably coupled to nucleotide binding and hydrolysis. Many fluorescent drug analogues are used in cell-based transport models; however, their specific interactions with P-gp have not been studied, and this limits interpretation of transport assays in terms of molecular models. Here we monitor binding of the fluorescent probe substrates BODIPY-verapamil, BODIPY-vinblastine, and Flutax-2 at low occupancy to murine P-gp in lipid nanodiscs via fluorescence correlation spectroscopy, in variable nucleotide-bound states. Changes in affinity for the different nucleotide-dependent conformations are probe-dependent. For BODIPY-verapamil and BODIPY-vinblastine, there are 2-10-fold increases in K

Indexed as

Models, MolecularAdenosine TriphosphateAnimalsATP Binding Cassette Transporter, Subfamily BBinding, CompetitiveBinding SitesBiological TransportBoron CompoundsDimyristoylphosphatidylcholineFluorescent DyesHumansHydrolysisKineticsLigandsLipid BilayersMiceAdenosine TriphosphateATP Binding Cassette Transporter, Subfamily BBodipy-verapamilBoron CompoundsDimyristoylphosphatidylcholineFluorescent DyesFlutax 2LigandsLipid Bilayersmultidrug resistance protein 3Recombinant Fusion ProteinsRecombinant ProteinsTaxoidsVerapamilVinblastine

Identifiers

PMID28441502
PMCPMC5701749
OpenAlexW2609517055

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.