Evidence map›Paper›PMID 28441415›Full record

ArticlePloS one2017

Pax7 remodels the chromatin landscape in skeletal muscle stem cells.

Karin C Lilja, Nan Zhang, Alessandro Magli, Volkan Gunduz, Christopher J Bowman, Robert W Arpke, Radbod Darabi, Michael Kyba, Rita Perlingeiro, Brian D Dynlacht

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 49 citations in OpenAlex.

  1. Review
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  11. Regulation of muscle stem cell fate.Cell regeneration (London, England) · 2022
    Review
  12. The regenerative potential of Pax3/Pax7 on skeletal muscle injury.Journal, genetic engineering & biotechnology · 2022
    Review
  13. Article
  14. Article
  15. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 1 country.

Karin C LiljaDepartment of Pathology, New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.
Nan ZhangDepartment of Pathology, New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.ORCID http://orcid.org/0000-0002-4134-7911
Alessandro MagliLillehei Heart Institute, University of Minnesota, Minneapolis, MN, United States of America.
Volkan GunduzDepartment of Pathology, New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.
Christopher J BowmanDepartment of Pathology, New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.
Robert W ArpkeDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States of America.ORCID http://orcid.org/0000-0002-0876-078X
Radbod DarabiThe University of Texas Health Science Center at Houston, Houston, TX, United States of America.
Michael KybaDepartment of Pediatrics, University of Minnesota, Minneapolis, MN, United States of America.ORCID http://orcid.org/0000-0002-5579-7534
Rita PerlingeiroLillehei Heart Institute, University of Minnesota, Minneapolis, MN, United States of America.
Brian D DynlachtDepartment of Pathology, New York University Cancer Institute, New York University School of Medicine, New York, New York, United States of America.ORCID http://orcid.org/0000-0001-9485-512X
New York University · USUniversity of Minnesota · USThe University of Texas Health Science Center at Houston · US

Funding

MEDICAL SCIENTIST TRAININGT32GM007308 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI PHILIPS, MARK REID · 1985 to 2019
$23.2M
Role of the pRB family in Quiescence and DifferentiationR01GM067132 · NIGMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DYNLACHT, BRIAN D · 2003 to 2015
$4.7M
Skeletal Muscle Regeneration from Differentiating Pluripotent Stem CellsR01AR055299 · NIAMS · UNIVERSITY OF MINNESOTA · PI PERLINGEIRO, RITA C. R. · 2008 to 2018
$3.3M
Epigenomic regulation in skeletal muscle cells and their precursorsR21AR068786 · NIAMS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI DYNLACHT, BRIAN D · 2016 to 2017
$410k
NIAMS NIH HHS R01 AR055299NIAMS NIH HHS R21 AR068786NIGMS NIH HHS R01 GM067132NIGMS NIH HHS T32 GM007308
6 · The paper itself

Abstract

Pluripotent stem cells (PSC) hold great promise for the treatment of human skeletal muscle diseases. However, it remains challenging to convert PSC to skeletal muscle cells, and the mechanisms by which the master regulatory transcription factor, Pax7, promotes muscle stem (satellite) cell identity are not yet understood. We have taken advantage of PSC-derived skeletal muscle precursor cells (iPax7), wherein the induced expression of Pax7 robustly initiates the muscle program and enables the in vitro generation of precursors that seed the satellite cell compartment upon transplantation. Remarkably, we found that chromatin accessibility in myogenic precursors pre-figures subsequent activation of myogenic differentiation genes. We also found that Pax7 binding is generally restricted to euchromatic regions and excluded from H3K27 tri-methylated regions in muscle cells, suggesting that recruitment of this factor is circumscribed by chromatin state. Further, we show that Pax7 binding induces dramatic, localized remodeling of chromatin characterized by the acquisition of histone marks associated with enhancer activity and induction of chromatin accessibility in both muscle precursors and lineage-committed myoblasts. Conversely, removal of Pax7 leads to rapid reversal of these features on a subset of enhancers. Interestingly, another cluster of Pax7 binding sites is associated with a durably accessible and remodeled chromatin state after removal of Pax7, and persistent enhancer accessibility is associated with subsequent, proximal binding by the muscle regulatory factors, MyoD1 and myogenin. Our studies provide new insights into the epigenetic landscape of skeletal muscle stem cells and precursors and the role of Pax7 in satellite cell specification.

Indexed as

AnimalsCell LineChromatinMiceMuscle CellsMuscle DevelopmentMuscle, SkeletalMyoD ProteinMyogeninPAX7 Transcription FactorPluripotent Stem CellsSatellite Cells, Skeletal MuscleChromatinMyoD ProteinMyogeninPax7 protein, mousePAX7 Transcription Factor

Identifiers

PMID28441415
PMCPMC5404880
OpenAlexW2609934552

What OpenQuestion holds

Textmetadata
LicenceCC0
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.