Evidence map›Paper›PMID 28441105›Full record

ArticleVirulence2017

Transcriptomic dissection of the horizontally acquired response regulator EsrB reveals its global regulatory roles in the physiological adaptation and activation of T3SS and the cognate effector repertoire in Edwardsiella piscicida during infection toward turbot.

Yang Liu, Luyao Zhao, Minjun Yang, Kaiyu Yin, Xiaohui Zhou, Ka Yin Leung, Qin Liu, Yuanxing Zhang, Qiyao Wang

Open access · goldAbstract read
In one paragraph

Article in Virulence, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 63 citations in OpenAlex.

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  12. The Attenuation Mechanism and Live Vaccine Potential of a Low-VirulenceJournal of microbiology and biotechnology · 2023
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  13. Versatile lifestyles ofVirulence · 2022
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  15. Review
  16. Review
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Yang Liua State Key Laboratory of Bioreactor Engineering , East China University of Science and Technology , Shanghai , China.
Luyao Zhaoa State Key Laboratory of Bioreactor Engineering , East China University of Science and Technology , Shanghai , China.
Minjun Yangb Shanghai-MOST Key Laboratory of Health and Disease Genomics , Chinese National Human Genome Center at Shanghai , Shanghai , China.
Kaiyu Yina State Key Laboratory of Bioreactor Engineering , East China University of Science and Technology , Shanghai , China.
Xiaohui Zhouc Department of Pathobiology and Veterinary Science , University of Connecticut , Storrs , CT , USA.
Ka Yin Leunga State Key Laboratory of Bioreactor Engineering , East China University of Science and Technology , Shanghai , China.
Qin Liua State Key Laboratory of Bioreactor Engineering , East China University of Science and Technology , Shanghai , China.
Yuanxing Zhanga State Key Laboratory of Bioreactor Engineering , East China University of Science and Technology , Shanghai , China.
Qiyao Wanga State Key Laboratory of Bioreactor Engineering , East China University of Science and Technology , Shanghai , China.
East China University of Science and Technology · CNChinese National Human Genome Center · CNUniversity of Connecticut · USWestern University · CA

Funding

Mechanisms and significance of intestinal cell proliferation in Vibrio parahaemolyticus infectionR01AI118943 · NIAID · UNIVERSITY OF CONNECTICUT STORRS · PI GEARY, STEVEN J · 2016 to 2019
$1.5M
NIAID NIH HHS R01 AI118943
6 · The paper itself

Abstract

Edwardsiella piscicida is the leading pathogen threatening worldwide aquaculture industries. The 2-component system (TCS) EsrA-EsrB is essential for the pathogenesis of this bacterium. However, little is known about the regulon and regulatory mechanism of EsrA-EsrB or about the factors that mediate the interaction of TCS with bacterial hosts. Here, our RNA-seq analysis indicated that EsrB strongly induces type III and type VI secretion systems (T3/T6SS) expression and that it modulates the expression of both physiology- and virulence-associated genes in E. piscicida grown in DMEM. EsrB binds directly to a highly conserved 18-bp DNA motif to regulate the expression of T3SS and other genes. EsrB/DMEM-activated genes include 3 known and 6 novel T3SS-dependent effectors. All these effector genes are highly induced by EsrB during the late stage of in vivo infection in fish. Furthermore, although in vivo colonization by the bacterium relies on EsrB and T3/T6SS expression, it does not require the expression of individual effectors other than EseJ. The mutant lacking these 9 effectors showed significant defects in in vivo colonization and virulence toward turbot, and, more importantly, a high level of protection against challenges by wild-type E. piscicida, suggesting that it may represent a promising live attenuated vaccine. Taken together, our data demonstrate that EsrB plays a global regulatory role in controlling physiologic responses and the expression of T3SS and its cognate effector genes. Our findings will facilitate further work on the mechanism of molecular pathogenesis of this bacterium during infection.

Indexed as

Adaptation, PhysiologicalAnimalsBacterial ProteinsEdwardsiellaEnterobacteriaceae InfectionsFish DiseasesFlatfishesGene Expression Regulation, BacterialTranscriptomeType III Secretion SystemsType VI Secretion SystemsVirulenceBacterial ProteinsType III Secretion SystemsType VI Secretion SystemsEdwardsiella piscicidaeffectorsEsrBRNA-seqT3SST6SS

Identifiers

PMID28441105
PMCPMC5711410
OpenAlexW2607651350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.