Evidence map›Paper›PMID 28440800›Full record

ArticleThe ISME journal2017

The Trichodesmium consortium: conserved heterotrophic co-occurrence and genomic signatures of potential interactions.

Michael D Lee, Nathan G Walworth, Erin L McParland, Fei-Xue Fu, Tracy J Mincer, Naomi M Levine, David A Hutchins, Eric A Webb

Open access · bronzeAbstract read
In one paragraph

Article in The ISME journal, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed
7.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 80 citations in OpenAlex.

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  15. Metagenome-Assembled Genome of a NovelMicrobiology resource announcements · 2023
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  16. Article
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  19. Discovery of nondiazotrophicProceedings of the National Academy of Sciences of the United States of America · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Michael D LeeMarine Environmental Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Nathan G WalworthMarine Environmental Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Erin L McParlandMarine Environmental Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Fei-Xue FuMarine Environmental Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Tracy J MincerWoods Hole Oceanographic Institute, Department of Marine Chemistry and Geochemistry, Woods Hole, MA, USA.
Naomi M LevineMarine Environmental Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
David A HutchinsMarine Environmental Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
Eric A WebbMarine Environmental Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, CA, USA.
University of Southern California · USWoods Hole Oceanographic Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nitrogen (N)-fixing cyanobacterium Trichodesmium is globally distributed in warm, oligotrophic oceans, where it contributes a substantial proportion of new N and fuels primary production. These photoautotrophs form macroscopic colonies that serve as relatively nutrient-rich substrates that are colonized by many other organisms. The nature of these associations may modulate ocean N and carbon (C) cycling, and can offer insights into marine co-evolutionary mechanisms. Here we integrate multiple omics-based and experimental approaches to investigate Trichodesmium-associated bacterial consortia in both laboratory cultures and natural environmental samples. These efforts have identified the conserved presence of a species of Gammaproteobacteria (Alteromonas macleodii), and enabled the assembly of a near-complete, representative genome. Interorganismal comparative genomics between A. macleodii and Trichodesmium reveal potential interactions that may contribute to the maintenance of this association involving iron and phosphorus acquisition, vitamin B

Indexed as

CarbonCyanobacteriaEcosystemGenomeGenomicsHeterotrophic ProcessesNitrogenNitrogen FixationOceans and SeasPhosphorusTrichodesmiumCarbonNitrogenPhosphorus

Identifiers

PMID28440800
PMCPMC5520037
OpenAlexW2610070461

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.