ArticleScientific data2017
A curated database of cyanobacterial strains relevant for modern taxonomy and phylogenetic studies.
Article in Scientific data, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- Genomic analysis highlights a novel class of DPCF-type cyanobacteriochrome.Photochemical & photobiological sciences : Official journal of the European Photochemistry Association and the European Society for Photobiology · 2026Article
- Prokaryotic taxonomy and nomenclature in the age of big sequence data.The ISME journal · 2021Review
- First insights into the impacts of benthic cyanobacterial mats on fish herbivory functions on a nearshore coral reef.Scientific reports · 2021Article
- Determination of Diversity, Distribution and Host Specificity of KoreanMycobiology · 2021Article
- Global distribution of a chlorophyll f cyanobacterial marker.The ISME journal · 2020Article
- A novel cyanobacterial geosmin producer, revising GeoA distribution and dispersion patterns in Bacteria.Scientific reports · 2020Article
- Taxonomic Novelty and Distinctive Genomic Features of Hot Spring Cyanobacteria.Frontiers in genetics · 2020Article
- Cyanobacterial diversity held in microbial biological resource centers as a biotechnological asset: the case study of the newly established LEGE culture collection.Journal of applied phycology · 2018Article
- Sponges-Cyanobacteria associations: Global diversity overview and new data from the Eastern Mediterranean.PloS one · 2018Article
- Ecogenomics and Taxonomy of Cyanobacteria Phylum.Frontiers in microbiology · 2017Article
Corrections and comments
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Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
The dataset herein described lays the groundwork for an online database of relevant cyanobacterial strains, named CyanoType (http://lege.ciimar.up.pt/cyanotype). It is a database that includes categorized cyanobacterial strains useful for taxonomic, phylogenetic or genomic purposes, with associated information obtained by means of a literature-based curation. The dataset lists 371 strains and represents the first version of the database (CyanoType v.1). Information for each strain includes strain synonymy and/or co-identity, strain categorization, habitat, accession numbers for molecular data, taxonomy and nomenclature notes according to three different classification schemes, hierarchical automatic classification, phylogenetic placement according to a selection of relevant studies (including this), and important bibliographic references. The database will be updated periodically, namely by adding new strains meeting the criteria for inclusion and by revising and adding up-to-date metadata for strains already listed. A global 16S rDNA-based phylogeny is provided in order to assist users when choosing the appropriate strains for their studies.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.