Evidence map›Paper›PMID 28439269›Full record

ArticleFrontiers in immunology2017

Genome-Wide Identification of Target Genes for the Key B Cell Transcription Factor

Prontip Saelee, Alyssa Kearly, Stephen L Nutt, Lee Ann Garrett-Sinha

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 22 citations in OpenAlex.

  1. Article
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  8. ETS1 Function in Leukemia and Lymphoma.Advances in experimental medicine and biology · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 2 countries.

Prontip SaeleeDepartment of Biochemistry, State University of New York at Buffalo, Buffalo, NY, USA.
Alyssa KearlyDepartment of Biochemistry, State University of New York at Buffalo, Buffalo, NY, USA.
Stephen L NuttThe Walter and Eliza Hall Institute of Medical Research, Parkville, VIC, Australia.
Lee Ann Garrett-SinhaDepartment of Biochemistry, State University of New York at Buffalo, Buffalo, NY, USA.
University at Buffalo, State University of New York · USWalter and Eliza Hall Institute of Medical Research · AU

Funding

Identification of Specific Roles for Ets-1 in B Cell ToleranceR01AI085127 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI GARRETT-SINHA, LEE ANN · 2010 to 2014
$2.1M
NIAID NIH HHS R01 AI085127
6 · The paper itself

Abstract

backgroundThe transcription factor Ets1 is highly expressed in B lymphocytes. Loss of Ets1 leads to premature B cell differentiation into antibody-secreting cells (ASCs), secretion of autoantibodies, and development of autoimmune disease. Despite the importance of Ets1 in B cell biology, few Ets1 target genes are known in these cells.

resultsTo obtain a more complete picture of the function of Ets1 in regulating B cell differentiation, we performed Ets1 ChIP-seq in primary mouse B cells to identify >10,000-binding sites, many of which were localized near genes that play important roles in B cell activation and differentiation. Although Ets1 bound to many sites in the genome, it was required for regulation of less than 5% of them as evidenced by gene expression changes in B cells lacking Ets1. The cohort of genes whose expression was altered included numerous genes that have been associated with autoimmune disease susceptibility. We focused our attention on four such Ets1 target genes Ptpn22, Stat4, Egr1, and Prdm1 to assess how they might contribute to Ets1 function in limiting ASC formation. We found that dysregulation of these particular targets cannot explain altered ASC differentiation in the absence of Ets1.

conclusionWe have identified genome-wide binding targets for Ets1 in B cells and determined that a relatively small number of these putative target genes require Ets1 for their normal expression. Interestingly, a cohort of genes associated with autoimmune disease susceptibility is among those that are regulated by Ets1. Identification of the target genes of Ets1 in B cells will help provide a clearer picture of how Ets1 regulates B cell responses and how its loss promotes autoantibody secretion.

Indexed as

autoimmunityChIP-seqenhancerEts1promoterRNA-seqtarget genes

Identifiers

PMID28439269
PMCPMC5383717
OpenAlexW2604320197

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.