Evidence map›Paper›PMID 28439208›Full record

ArticleProteome science2016

Proteomic profiling of HBV infected liver biopsies with different fibrotic stages.

Seyma Katrinli, Kamil Ozdil, Abdurrahman Sahin, Oguzhan Ozturk, Gozde Kir, Ahmet Tarik Baykal, Emel Akgun, Omer Sinan Sarac, Mehmet Sokmen, H Levent Doğanay and 1 more

Abstract read
In one paragraph

Article in Proteome science, 2016. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Seyma KatrinliMolecular Biology Biotechnology and Genetics Research Center (MOBGAM), Istanbul Technical University, Sariyer, Istanbul, Turkey.
Kamil OzdilGastroenterology, Umraniye Teaching and Research Hospital, Umraniye, Istanbul, Turkey.
Abdurrahman SahinGastroenterology, Umraniye Teaching and Research Hospital, Umraniye, Istanbul, Turkey.
Oguzhan OzturkGastroenterology, Umraniye Teaching and Research Hospital, Umraniye, Istanbul, Turkey.
Gozde KirPathology, Umraniye Teaching and Research Hospital, Umraniye, Istanbul, Turkey.
Ahmet Tarik BaykalDepartment of Medical Biochemistry, School of Medicine, Acibadem University, Istanbul, Turkey.
Emel AkgunDepartment of Medical Biochemistry, School of Medicine, Acibadem University, Istanbul, Turkey.
Omer Sinan SaracComputer Engineering, Istanbul Technical University, Sarıyer, Istanbul, Turkey.
Mehmet SokmenGastroenterology, Umraniye Teaching and Research Hospital, Umraniye, Istanbul, Turkey.
H Levent DoğanayGastroenterology, Umraniye Teaching and Research Hospital, Umraniye, Istanbul, Turkey.
Gizem Dinler DoğanayMolecular Biology Biotechnology and Genetics Research Center (MOBGAM), Istanbul Technical University, Sariyer, Istanbul, Turkey.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundHepatitis B virus (HBV) is a global health problem, and infected patients if left untreated may develop cirrhosis and eventually hepatocellular carcinoma. This study aims to enlighten pathways associated with HBV related liver fibrosis for delineation of potential new therapeutic targets and biomarkers.

methodsTissue samples from 47 HBV infected patients with different fibrotic stages (F1 to F6) were enrolled for 2D-DIGE proteomic screening. Differentially expressed proteins were identified by mass spectrometry and verified by western blotting. Functional proteomic associations were analyzed by EnrichNet application.

resultsFibrotic stage variations were observed for apolipoprotein A1 (APOA1), pyruvate kinase PKM (KPYM), glyceraldehyde 3-phospahate dehydrogenase (GAPDH), glutamate dehydrogenase (DHE3), aldehyde dehydrogenase (ALDH2), alcohol dehydrogenase (ALDH1A1), transferrin (TRFE), peroxiredoxin 3 (PRDX3), phenazine biosynthesis-like domain-containing protein (PBLD), immuglobulin kappa chain C region (IGKC), annexin A4 (ANXA4), keratin 5 (KRT5). Enrichment analysis with Reactome and Kegg databases highlighted the possible involvement of platelet release, glycolysis and HDL mediated lipid transport pathways. Moreover, string analysis revealed that HIF-1α (Hypoxia-inducible factor 1-alpha), one of the interacting partners of HBx (Hepatitis B X protein), may play a role in the altered glycolytic response and oxidative stress observed in liver fibrosis.

conclusionsTo our knowledge, this is the first protomic research that studies HBV infected fibrotic human liver tissues to investigate alterations in protein levels and affected pathways among different fibrotic stages. Observed changes in the glycolytic pathway caused by HBx presence and therefore its interactions with HIF-1α can be a target pathway for novel therapeutic purposes.

Indexed as

Chronic hepatitis BGlycolysisLiver fibrosisProteomicsTwo-dimensional difference gel electrophoresis

Identifiers

PMID28439208
PMCPMC5399407

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.