Evidence map›Paper›PMID 28436623›Full record

ArticleAmerican journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics2017

MTHFR methylation moderates the impact of smoking on DNA methylation at AHRR for African American young adults.

Steven R H Beach, Man Kit Lei, Mei Ling Ong, Gene H Brody, Meeshanthini V Dogan, Robert A Philibert

Open access · greenAbstract read
In one paragraph

Article in American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.

0numbers the graph read from it
0cells of the map it votes in
13citing papers in PubMed
1.8field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

13 citing papers in PubMed, 20 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Observational
  5. In utero tobacco smoke exposure, DNA methylation, and asthma in Latino children.Environmental epidemiology (Philadelphia, Pa.) · 2019
    Article
  6. Review
  7. Article
  8. MTHFR regulatory effects on methylation of CG05575921 in response to smoking: Effects are also discernable using MTHFR expression.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2018
    Article
  9. Genome-wide and digital polymerase chain reaction epigenetic assessments of alcohol consumption.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2018
    Article
  10. Article
  11. Methylation ofFrontiers in genetics · 2018
    Article
  12. Optimizing the chances of success in the search for epigenetic biomarkers: Embracing genetic variation.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2017
    Review
  13. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Steven R H BeachDepartment of Psychology, University of Georgia, Athens, Georgia.ORCID http://orcid.org/0000-0001-8053-7761
Man Kit LeiUniversity of Georgia, Center for Family Research, Athens, Georgia.
Mei Ling OngUniversity of Georgia, Center for Family Research, Athens, Georgia.
Gene H BrodyUniversity of Georgia, Center for Family Research, Athens, Georgia.
Meeshanthini V DoganCollege of Engineering, University of Iowa, Iowa City, Iowa.ORCID http://orcid.org/0000-0001-8944-6145
Robert A PhilibertDepartment of Psychiatry, University of Iowa, Iowa City, Iowa.
University of Georgia · USUniversity of Iowa · US

Funding

RURAL AFRICAN AMERICAN YOUNG ADULTS' PATHWAYS TO PSYCHOSOCIAL AND PHYSICAL HEALTHR01HD030588 · NICHD · UNIVERSITY OF GEORGIA (UGA) · PI EHRLICH, KATHERINE BABCOCK · 1993 to 2023
$12.0M
Vulnerability to Drug Use & HIV: Advancing Prevention for Rural African AmericansP30DA027827 · NIDA · UNIVERSITY OF GEORGIA · PI BRODY, GENE H. · 2009 to 2018
$10.2M
Biomarkers of Health Risk Among African American CouplesR01HD080749 · NICHD · UNIVERSITY OF GEORGIA · PI BEACH, STEVEN R, SIMONS, RONALD L · 2015 to 2019
$2.9M
The Relationship of AHRR Methylation to Risky Adolescent BehaviorsR01DA037648 · NIDA · UNIVERSITY OF IOWA · PI GERRARD, MEG, PHILIBERT, ROBERT A · 2014 to 2017
$2.4M
NICHD NIH HHS R01 HD030588NICHD NIH HHS R01 HD080749NIDA NIH HHS P30 DA027827NIDA NIH HHS R01 DA037648
6 · The paper itself

Abstract

Smoking has been shown to have a large, reliable, and rapid effect on demethylation of AHRR, particularly at cg05575921, suggesting that methylation may be used as an index of cigarette consumption. Because the availability of methyl donors may also influence the degree of demethylation in response to smoking, factors that affect the activity of methylene tetrahydrofolate reductase (MTHFR), a key regulator of methyl group availability, may be of interest. In the current investigation, we examined the extent to which individual differences in methylation of MTHFR moderated the association between smoking and demethylation at cg05575921 as well as at other loci on AHRR associated with a main effect of smoking. Using a discovery sample (AIM, N = 293), and a confirmatory sample (SHAPE, N = 368) of young adult African Americans, degree of methylation of loci in the first exon of MTHFR was associated with amplification of the association between smoking and AHRR demethylation at cg05575921. However, genetic variation at a commonly studied MTHFR variant, C677T, did not influence cg05575921 methylation. The significant interaction between MTHFR methylation and the smoking-induced response at cg05575921 suggests a role for individual differences in methyl cycle regulation in understanding the effects of cigarette consumption on genome wide DNA methylation.

Indexed as

DNA MethylationAdolescentAdultBasic Helix-Loop-Helix ProteinsBlack or African AmericanEpigenesis, GeneticHumansMaleMethylenetetrahydrofolate Reductase (NADPH2)Repressor ProteinsSmokingYoung AdultAHRR protein, humanBasic Helix-Loop-Helix ProteinsMethylenetetrahydrofolate Reductase (NADPH2)MTHFR protein, humanRepressor ProteinsAfrican AmericanAHRRfolatemethylationMTHFRsmoking

Identifiers

PMID28436623
PMCPMC5561486
OpenAlexW2609623736

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.