Evidence map›Paper›PMID 28435872›Full record

ArticleScience advances2017

Unraveling self-assembly pathways of the 468-kDa proteolytic machine TET2.

Pavel Macek, Rime Kerfah, Elisabetta Boeri Erba, Elodie Crublet, Christine Moriscot, Guy Schoehn, Carlos Amero, Jerome Boisbouvier

Abstract read
In one paragraph

Article in Science advances, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Protein NMR: Boundless opportunities.Journal of magnetic resonance (San Diego, Calif. : 1997) · 2019
    Review
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Pavel MacekUniversité Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France.ORCID 0000-0003-3774-7717
Rime KerfahUniversité Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France.
Elisabetta Boeri ErbaUniversité Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France.ORCID 0000-0002-5910-4707
Elodie CrubletUniversité Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France.
Christine MoriscotUniversité Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France.
Guy SchoehnUniversité Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France.
Carlos AmeroCentro de Investigaciones Químicas, IICBA, Universidad Autónoma del Estado de Morelos, México.
Jerome BoisbouvierUniversité Grenoble Alpes, Institut de Biologie Structurale (IBS), Grenoble, France.

Funding

European Research Council 260887
6 · The paper itself

Abstract

The spontaneous formation of biological higher-order structures from smaller building blocks, called self-assembly, is a fundamental attribute of life. Although the protein self-assembly is a time-dependent process that occurs at the molecular level, its current understanding originates either from static structures of trapped intermediates or from modeling. Nuclear magnetic resonance (NMR) spectroscopy has the unique ability to monitor structural changes in real time; however, its size limitation and time-resolution constraints remain a challenge when studying the self-assembly of large biological particles. We report the application of methyl-specific isotopic labeling combined with relaxation-optimized NMR spectroscopy to overcome both size- and time-scale limitations. We report for the first time the self-assembly process of a half-megadalton protein complex that was monitored at the structural level, including the characterization of intermediate states, using a mutagenesis-free strategy. NMR was used to obtain individual kinetics data on the different transient intermediates and the formation of final native particle. In addition, complementary time-resolved electron microscopy and native mass spectrometry were used to characterize the low-resolution structures of oligomerization intermediates.

Indexed as

Protein MultimerizationArchaeal ProteinsNuclear Magnetic Resonance, BiomolecularPeptide HydrolasesProtein Structure, QuaternaryPyrococcus horikoshiiArchaeal ProteinsPeptide HydrolasesElectron microscopymass spectrometryNuclear magnetic resonancequaternary structureReal-time structural studyself-assemblyStructural Biology

Identifiers

PMID28435872
PMCPMC5384809

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.