Evidence map›Paper›PMID 28435514›Full record

ArticleProceedings. IEEE International Symposium on Biomedical Imaging2015

AUTOMATIC MUSCLE PERIMYSIUM ANNOTATION USING DEEP CONVOLUTIONAL NEURAL NETWORK.

Manish Sapkota, Fuyong Xing, Hai Su, Lin Yang

Abstract read
In one paragraph

Article in Proceedings. IEEE International Symposium on Biomedical Imaging, 2015. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.2field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Manish SapkotaDepartment of Electrical and Computer Engineering, University of Florida.
Fuyong XingDepartment of Electrical and Computer Engineering, University of Florida.
Hai SuJ. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida.
Lin YangJ. Crayton Pruitt Family Department of Biomedical Engineering, University of Florida.
University of Florida · US

Funding

Development and Dissemination of MuscleMiner: An Imaging Informatics Tool for MusR01AR065479 · NIAMS · UNIVERSITY OF FLORIDA · PI DING, MINGZHOU · 2014 to 2018
$1.8M
NIAMS NIH HHS R01 AR065479
6 · The paper itself

Abstract

Diseased skeletal muscle expresses mononuclear cell infiltration in the regions of perimysium. Accurate annotation or segmentation of perimysium can help biologists and clinicians to determine individualized patient treatment and allow for reasonable prognostication. However, manual perimysium annotation is time consuming and prone to inter-observer variations. Meanwhile, the presence of ambiguous patterns in muscle images significantly challenge many traditional automatic annotation algorithms. In this paper, we propose an automatic perimysium annotation algorithm based on deep convolutional neural network (CNN). We formulate the automatic annotation of perimysium in muscle images as a pixel-wise classification problem, and the CNN is trained to label each image pixel with raw RGB values of the patch centered at the pixel. The algorithm is applied to 82 diseased skeletal muscle images. We have achieved an average precision of 94% on the test dataset.

Indexed as

convolutional neural networkmusclePerimysium annotation

Identifiers

PMID28435514
PMCPMC5397117
OpenAlexW1510525516

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.