Evidence map›Paper›PMID 28432632›Full record

ArticleJournal of fluorescence2017

Tryptophan Fluorescence Yields and Lifetimes as a Probe of Conformational Changes in Human Glucokinase.

Bogumil Zelent, Chris Bialas, Ignacy Gryczynski, Pan Chen, Rahul Chib, Karina Lewerissa, Maria G Corradini, Richard D Ludescher, Jane M Vanderkooi, Franz M Matschinsky

Open access · greenAbstract read
In one paragraph

Article in Journal of fluorescence, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.7field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 4 institutions in 1 country.

Bogumil ZelentDepartment of Biochemistry and Biophysics and Diabetes Research Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA. zelentb@mail.med.upenn.edu.
Chris BialasJohnson Research Foundation, Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Ignacy GryczynskiDepartment of Cell Biology and Immunology, Center for Fluorescence Technologies and Nanomedicine, University of North Texas Health Science Center, Fort Worth, TX, USA.
Pan ChenDepartment of Biochemistry and Biophysics and Diabetes Research Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Rahul ChibDepartment of Food Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA.
Karina LewerissaDepartment of Food Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA.
Maria G CorradiniDepartment of Food Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA.
Richard D LudescherDepartment of Food Science, Rutgers, The State University of New Jersey, New Brunswick, NJ, USA.
Jane M VanderkooiJohnson Research Foundation, Department of Biochemistry and Biophysics, University of Pennsylvania, Philadelphia, PA, 19104, USA.
Franz M MatschinskyDepartment of Biochemistry and Biophysics and Diabetes Research Center, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA. matsch@mail.med.upenn.edu.
Rutgers, The State University of New Jersey · USUniversity of Pennsylvania · USJohnson Foundation · USUniversity of North Texas Health Science Center · US

Funding

STRUCTURAL BIOLOGY TRAINING PROGRAMT32GM008275 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI WAND, A. JOSHUA · 1988 to 2018
$6.0M
METABOLISM OF ISLETS OF LANGERHANS AND HORMONE RELEASER01DK022122 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MATSCHINSKY, FRANZ M · 1994 to 2011
$5.4M
METABOLISM OF ISLETS OF LANGERHANS &HORMONE RELEASER37DK022122 · NIDDK · UNIVERSITY OF PENNSYLVANIA · PI MATSCHINSKY, FRANZ M · 1986 to 1993
–
National Institute of Diabetes and Digestive and Kidney Diseases 22122NIGMS NIH HHS T32 GM008275
6 · The paper itself

Abstract

Five variants of glucokinase (ATP-D-hexose-6-phosphotransferase, EC 2.7.1.1) including wild type and single Trp mutants with the Trp residue at positions 65, 99, 167 and 257 were prepared. The fluorescence of Trp in all locations studied showed intensity changes when glucose bound, indicating that conformational change occurs globally over the entire protein. While the fluorescence quantum yield changes upon glucose binding, the enzyme's absorption spectra, emission spectra and fluorescence lifetimes change very little. These results are consistent with the existence of a dark complex for excited state Trp. Addition of glycerol, L-glucose, sucrose, or trehalose increases the binding affinity of glucose to the enzyme and increases fluorescence intensity. The effect of these osmolytes is thought to shift the protein conformation to a condensed, high affinity form. Based upon these results, we consider the nature of quenching of the Trp excited state. Amide groups are known to quench indole fluorescence and amides of the polypeptide chain make interact with excited state Trp in the relatively unstructured, glucose-free enzyme. Also, removal of water around the aromatic ring by addition of glucose substrate or osmolyte may reduce the quenching.

Indexed as

FluorescenceProtein ConformationGlucokinaseHumansMutationSpectrometry, FluorescenceSubstrate SpecificityTryptophanGlucokinaseTryptophanAromatic groupsDark complexesGlucokinaseGlucoseGlycerolOsmolitesTryptophan fluorescence

Identifiers

PMID28432632
PMCPMC6025808
OpenAlexW2606502664

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.