Evidence map›Paper›PMID 28432307›Full record

ArticleScientific reports2017

Arsenic metabolism in high altitude modern stromatolites revealed by metagenomic analysis.

Daniel Kurth, Ariel Amadio, Omar F Ordoñez, Virginia H Albarracín, Wolfgang Gärtner, María E Farías

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
6.2field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 69 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Daniel KurthPlanta Piloto de Procesos Industriales y Microbiológicos (PROIMI), CCT Tucumán, CONICET, San Miguel de Tucumán, Argentina.ORCID http://orcid.org/0000-0001-8481-4359
Ariel AmadioE.E.A. Rafaela, Instituto Nacional de Tecnología Agropecuaria (INTA), CCT Santa Fe, CONICET, Rafaela, Argentina.
Omar F OrdoñezPlanta Piloto de Procesos Industriales y Microbiológicos (PROIMI), CCT Tucumán, CONICET, San Miguel de Tucumán, Argentina.
Virginia H AlbarracínPlanta Piloto de Procesos Industriales y Microbiológicos (PROIMI), CCT Tucumán, CONICET, San Miguel de Tucumán, Argentina.
Wolfgang GärtnerMax-Planck Institute for Chemical Energy Conversion, Mülheim an der Ruhr, Germany.
María E FaríasPlanta Piloto de Procesos Industriales y Microbiológicos (PROIMI), CCT Tucumán, CONICET, San Miguel de Tucumán, Argentina. mefarias2009@gmail.com.
Consejo Nacional de Investigaciones Científicas y Técnicas · ARMax Planck Institute for Chemical Energy Conversion · DENational University of Tucumán · AR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Modern stromatolites thrive only in selected locations in the world. Socompa Lake, located in the Andean plateau at 3570 masl, is one of the numerous extreme Andean microbial ecosystems described over recent years. Extreme environmental conditions include hypersalinity, high UV incidence, and high arsenic content, among others. After Socompa's stromatolite microbial communities were analysed by metagenomic DNA sequencing, taxonomic classification showed dominance of Proteobacteria, Bacteroidetes and Firmicutes, and a remarkably high number of unclassified sequences. A functional analysis indicated that carbon fixation might occur not only by the Calvin-Benson cycle, but also through alternative pathways such as the reverse TCA cycle, and the reductive acetyl-CoA pathway. Deltaproteobacteria were involved both in sulfate reduction and nitrogen fixation. Significant differences were found when comparing the Socompa stromatolite metagenome to the Shark Bay (Australia) smooth mat metagenome: namely, those involving stress related processes, particularly, arsenic resistance. An in-depth analysis revealed a surprisingly diverse metabolism comprising all known types of As resistance and energy generating pathways. While the ars operon was the main mechanism, an important abundance of arsM genes was observed in selected phyla. The data resulting from this work will prove a cornerstone for further studies on this rare microbial community.

Indexed as

AltitudeArsenicBacillotaBacteriaBacteroidetesGene Regulatory NetworksGeologic SedimentsMetagenomicsPhylogenyProteobacteriaSequence Analysis, DNAArsenic

Identifiers

PMID28432307
PMCPMC5430908
OpenAlexW2605602485

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.