Evidence map›Paper›PMID 28431510›Full record

ArticleBMC plant biology2017

Delayed response to cold stress is characterized by successive metabolic shifts culminating in apple fruit peel necrosis.

Nigel E Gapper, Maarten L A T M Hertog, Jinwook Lee, David A Buchanan, Rachel S Leisso, Zhangjun Fei, Guiqin Qu, James J Giovannoni, Jason W Johnston, Robert J Schaffer and 4 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
11.2field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 43 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 3 countries.

Nigel E GapperSchool of Plant Science, Horticulture Section, Cornell University, Ithaca, NY, 14853, USA.
Maarten L A T M HertogBIOSYST-MeBioS, KU Leuven, Heverlee, Belgium.
Jinwook LeeTree Fruit Research Laboratory, United States Department of Agriculture, Agricultural Research Service, 1104 N. Western Ave, Wenatchee, WA, 98801, USA.
David A BuchananTree Fruit Research Laboratory, United States Department of Agriculture, Agricultural Research Service, 1104 N. Western Ave, Wenatchee, WA, 98801, USA.
Rachel S LeissoTree Fruit Research Laboratory, United States Department of Agriculture, Agricultural Research Service, 1104 N. Western Ave, Wenatchee, WA, 98801, USA.
Zhangjun FeiBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA.
Guiqin QuBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA.
James J GiovannoniBoyce Thompson Institute for Plant Research, Cornell University, Ithaca, NY, 14853, USA.
Jason W JohnstonThe New Zealand Institute for Plant and Food Research, Ltd, Havelock North, New Zealand.
Robert J SchafferThe New Zealand Institute for Plant and Food Research, Ltd, Auckland, New Zealand.
Bart M NicolaïBIOSYST-MeBioS, KU Leuven, Heverlee, Belgium.
James P MattheisTree Fruit Research Laboratory, United States Department of Agriculture, Agricultural Research Service, 1104 N. Western Ave, Wenatchee, WA, 98801, USA.
Christopher B WatkinsSchool of Plant Science, Horticulture Section, Cornell University, Ithaca, NY, 14853, USA.
David R RudellTree Fruit Research Laboratory, United States Department of Agriculture, Agricultural Research Service, 1104 N. Western Ave, Wenatchee, WA, 98801, USA. David.Rudell@ars.usda.gov.
Cornell University · USUnited States Department of Agriculture · USKU Leuven · BEPlant & Food Research · NZTree Fruit Research Laboratory · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundSuperficial scald is a physiological disorder of apple fruit characterized by sunken, necrotic lesions appearing after prolonged cold storage, although initial injury occurs much earlier in the storage period. To determine the degree to which the transition to cell death is an active process and specific metabolism involved, untargeted metabolic and transcriptomic profiling was used to follow metabolism of peel tissue over 180 d of cold storage.

resultsThe metabolome and transcriptome of peel destined to develop scald began to diverge from peel where scald was controlled using antioxidant (diphenylamine; DPA) or rendered insensitive to ethylene using 1-methylcyclopropene (1-MCP) beginning between 30 and 60 days of storage. Overall metabolic and transcriptomic shifts, representing multiple pathways and processes, occurred alongside α-farnesene oxidation and, later, methanol production alongside symptom development.

conclusionsResults indicate this form of peel necrosis is a product of an active metabolic transition involving multiple pathways triggered by chilling temperatures at cold storage inception rather than physical injury. Among multiple other pathways, enhanced methanol and methyl ester levels alongside upregulated pectin methylesterases are unique to peel that is developing scald symptoms similar to injury resulting from mechanical stress and herbivory in other plants.

Indexed as

Cold-Shock ResponsePlant DiseasesCarboxylic Ester HydrolasesCold TemperatureEstersFood StorageFruitGene Expression ProfilingGene Expression Regulation, PlantMalusMetabolomeMethanolUp-RegulationCarboxylic Ester HydrolasesEstersMethanolpectinesteraseApple fruitCell death mechanismChilling stressMalus × domestica BorkhMetabolomicsSenescenceTranscriptomics

Identifiers

PMID28431510
PMCPMC5399402
OpenAlexW2607041997

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.