ArticleGenome biology and evolution2017
Insights into the Existence of Isomeric Plastomes in Cupressoideae (Cupressaceae).
Article in Genome biology and evolution, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.
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31 citing papers in PubMed.
- Ongoing structural changes highlight the dynamic nature of chloroplast genomes.Nucleic acids research · 2026Article
- Complex plastome structural variation caused by intermolecular and intramolecular recombination accounts for leaf variegation inPlant diversity · 2026Article
- Chloroplast whole genome assembly and phylogenetic analysis of Persicaria criopolitana reveals its new taxonomic status.Scientific reports · 2025Article
- Unprecedented variation pattern of plastid genomes and the potential role in adaptive evolution in Poales.BMC biology · 2024Article
- Complete organelle genomes of Korean fir, Abies koreana and phylogenomics of the gymnosperm genus Abies using nuclear and cytoplasmic DNA sequence data.Scientific reports · 2024Article
- Leaf variegation caused by plastome structural variation: an example fromHorticulture research · 2024Article
- A plastid phylogenomic framework for the palm family (Arecaceae).BMC biology · 2023Article
- Plastome variations reveal the distinct evolutionary scenarios of plastomes in the subfamily Cereoideae (Cactaceae).BMC plant biology · 2023Article
- Plastid phylogenomics uncovers multiple species in Medicago truncatula (Fabaceae) germplasm accessions.Scientific reports · 2022Article
- Recent advances on phylogenomics of gymnosperms and a new classification.Plant diversity · 2022Article
- Does IR-loss promote plastome structural variation and sequence evolution?Frontiers in plant science · 2022Article
- Comparative plastid genomics of Mazaceae: focusing on a new recognized genus, Puchiumazus.Planta · 2021Article
- Molecular evolution and SSRs analysis based on the chloroplast genome ofEcology and evolution · 2021Article
- Tight association of genome rearrangements with gene expression in conifer plastomes.BMC plant biology · 2021Article
- Lectotypification ofPhytoKeys · 2021Article
- Genome skimming and exploration of DNA barcodes for Taiwan endemic cypresses.Scientific reports · 2020Article
- GetOrganelle: a fast and versatile toolkit for accurate de novo assembly of organelle genomes.Genome biology · 2020Article
- Plastome Structural Conservation and Evolution in the Clusioid Clade of Malpighiales.Scientific reports · 2020Article
- Unprecedented Intraindividual Structural Heteroplasmy in Eleocharis (Cyperaceae, Poales) Plastomes.Genome biology and evolution · 2020Article
- Plastome Phylogenomic and Biogeographical Study onBioMed research international · 2020Article
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4 authors.
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Abstract
The cypress family (Cupressaceae) possesses highly rearranged plastomes that lack a pair of large inverted repeats typically found in land plants. A few cypress species have been reported to contain isomeric plastomes, but whether the existence of isomeric plastomes is ubiquitous in the family remains to be investigated with a broader taxon sampling. In this study, we sequenced the complete plastomes of ten species in Cupressoideae, the largest cypress subfamily. Cupressoideae showed relatively accelerated rates of substitutions at both nonsynonymous and synonymous sites as compared with other subfamilies of Cupressaceae. Our PCR and read mapping analyses together suggested the existence of isomeric plastomes in eight of the ten sequenced Cupressoideae species. The isomeric plastomes were also detected in 176 individuals from nine wild populations of four Cupressoideae species. Within Calocedrus macrolepis, we discovered a new type of isomeric plastomes that was likely derived from homologous recombination mediated by an 11-bp repeat. We conclude that isomeric plastomes are commonly present in Cupressoideae, thereby contributing to increased plastomic complexity.
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