Evidence map›Paper›PMID 28428425›Full record

ArticleScience (New York, N.Y.)2017

Neonatal acquisition of

Yun-Gi Kim, Kei Sakamoto, Sang-Uk Seo, Joseph M Pickard, Merritt G Gillilland, Nicholas A Pudlo, Matthew Hoostal, Xue Li, Thomas D Wang, Taylor Feehley and 7 more

Abstract read
In one paragraph

Article in Science (New York, N.Y.), 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 172 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
172citing papers in PubMed, 3 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

172 citing papers in PubMed, 3 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Trial
  6. Effects of Short-Term Dietary Fiber Intervention on Gut Microbiota in Young Healthy People.Diabetes, metabolic syndrome and obesity : targets and therapy · 2021
    Trial
  7. Review
  8. Article
  9. Review
  10. Article
  11. Review
  12. Review
  13. Article
  14. Infection strategies ofGut microbes reports · 2026
    Review
  15. Article
  16. Article
  17. Review
  18. Article
  19. Cecal Metabolome Profiles of Turkey Poults in Response toAnimals : an open access journal from MDPI · 2025
    Article
  20. Article

112 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Yun-Gi KimDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. gabriel.nunez@umich.edu yungikim77@gmail.com.ORCID 0000-0003-4251-1848
Kei SakamotoDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0003-4052-379X
Sang-Uk SeoDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Joseph M PickardDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Merritt G GillillandDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-6750-8541
Nicholas A PudloDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-3725-1300
Matthew HoostalDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0003-3429-7706
Xue LiDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.
Thomas D WangDepartments of Biomedical Engineering and Mechanical Engineering, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0001-9182-9620
Taylor FeehleyDepartment of Pathology and Committee on Immunology, University of Chicago, Chicago, IL 60637, USA.
Andrew T StefkaDepartment of Pathology and Committee on Immunology, University of Chicago, Chicago, IL 60637, USA.
Thomas M SchmidtDepartment of Internal Medicine, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-8209-6055
Eric C MartensDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0001-6681-2990
Shinji FukudaInstitute for Advanced Biosciences, Keio University, Yamagata, Japan.
Naohiro InoharaDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA.ORCID 0000-0002-4215-9349
Cathryn R NaglerDepartment of Pathology and Committee on Immunology, University of Chicago, Chicago, IL 60637, USA.ORCID 0000-0001-7254-6617
Gabriel NúñezDepartment of Pathology, University of Michigan Medical School, Ann Arbor, MI 48109, USA. gabriel.nunez@umich.edu yungikim77@gmail.com.ORCID 0000-0002-6529-2695

Funding

Role of Immunity and the Microbiota in Enteropathogenic E. coli EradicationR01DK095782 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NUNEZ, GABRIEL · 2013 to 2022
$3.6M
Training in Basic and Translational Digestive SciencesT32DK094775 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI JOHN Y KAO, LINDA C. SAMUELSON · 2012 to 2026
$3.6M
The Role of Inflammasomes in Mucosal Immunity to Intestinal Bacterial PathogensR01DK091191 · NIDDK · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI NUNEZ, GABRIEL · 2010 to 2019
$3.1M
Protective role of intestinal microbiota in food allergyR01AI106302 · NIAID · UNIVERSITY OF CHICAGO · PI NAGLER, CATHRYN R · 2014 to 2018
$2.2M
Impacts of Molecular Oxygen on the Structure and Function of the Intestinal MicroR01GM099549 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI GRATE, JAY W, SCHMIDT, THOMAS M · 2013 to 2016
$1.1M
NIAID NIH HHS R01 AI106302NIDDK NIH HHS R01 DK091191NIDDK NIH HHS R01 DK095782NIDDK NIH HHS T32 DK094775NIGMS NIH HHS R01 GM099549
6 · The paper itself

Abstract

The high susceptibility of neonates to infections has been assumed to be due to immaturity of the immune system, but the mechanism remains unclear. By colonizing adult germ-free mice with the cecal contents of neonatal and adult mice, we show that the neonatal microbiota is unable to prevent colonization by two bacterial pathogens that cause mortality in neonates. The lack of colonization resistance occurred when Clostridiales were absent in the neonatal microbiota. Administration of Clostridiales, but not Bacteroidales, protected neonatal mice from pathogen infection and abrogated intestinal pathology upon pathogen challenge. Depletion of Clostridiales also abolished colonization resistance in adult mice. The neonatal bacteria enhanced the ability of protective Clostridiales to colonize the gut.

Indexed as

Adaptor Proteins, Vesicular TransportAnimalsAnimals, NewbornBacteroidesCecumClostridiumGastrointestinal MicrobiomeGerm-Free LifeIntestinesMiceMice, Inbred C57BLMice, Mutant StrainsMyeloid Differentiation Factor 88Pancreatitis-Associated ProteinsAdaptor Proteins, Vesicular TransportMyd88 protein, mouseMyeloid Differentiation Factor 88Pancreatitis-Associated ProteinsReg3b protein, mouseReg3g protein, mouseTicam1 protein, mouse

Identifiers

PMID28428425
PMCPMC6082366

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.