Evidence map›Paper›PMID 28426742›Full record

ArticlePloS one2017

Multiple components of PKA and TGF-β pathways are mutated in pseudomyxoma peritonei.

Lilli Saarinen, Pirjo Nummela, Alexandra Thiel, Rainer Lehtonen, Petrus Järvinen, Heikki Järvinen, Lauri A Aaltonen, Anna Lepistö, Sampsa Hautaniemi, Ari Ristimäki

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
2.5field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Lilli SaarinenGenome-Scale Biology Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland.
Pirjo NummelaGenome-Scale Biology Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland.
Alexandra ThielGenome-Scale Biology Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland.
Rainer LehtonenGenome-Scale Biology Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland.
Petrus JärvinenDepartment of Surgery, Helsinki University Hospital, Helsinki, Finland.
Heikki JärvinenDepartment of Surgery, Helsinki University Hospital, Helsinki, Finland.
Lauri A AaltonenGenome-Scale Biology Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland.
Anna LepistöDepartment of Surgery, Helsinki University Hospital, Helsinki, Finland.
Sampsa HautaniemiGenome-Scale Biology Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland.
Ari RistimäkiGenome-Scale Biology Research Program, Research Programs Unit, University of Helsinki, Helsinki, Finland.ORCID http://orcid.org/0000-0002-5373-9234
University of Helsinki · FIHelsinki University Hospital · FI

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Pseudomyxoma peritonei (PMP) is a subtype of mucinous adenocarcinoma mainly restricted to the peritoneal cavity and most commonly originating from the appendix. The genetic background of PMP is poorly understood and no targeted treatments are currently available for this fatal disease. While RAS signaling pathway is affected in most if not all PMP cases and over half of them also have a mutation in the GNAS gene, other genetic alterations and affected pathways are, to a large degree, poorly known. In this study, we sequenced whole coding genome of nine PMP tumors and paired normal tissues in order to identify additional, commonly mutated genes and signaling pathways affected in PMP. These exome sequencing results were validated with an ultra-deep amplicon sequencing method, leading to 14 validated variants. The validated results contain seven genes that contribute to the protein kinase A (PKA) pathway. PKA pathway, which also contains GNAS, is a major player of overproduction of mucin, which is the characteristic feature of PMP. In addition to PKA pathway, we identified mutations in six genes that belong to the transforming growth factor beta (TGF-β) pathway, which is a key regulator of cell proliferation. Since either GNAS mutation or an alternative mutation in the PKA pathway was identified in 8/9 patients, inhibition of the PKA pathway might reduce mucin production in most of the PMP patients and potentially suppress disease progression.

Indexed as

MutationCyclic AMP-Dependent Protein KinasesExomeHigh-Throughput Nucleotide SequencingHumansPolymorphism, Single NucleotidePseudomyxoma PeritoneiTransforming Growth Factor betaCyclic AMP-Dependent Protein KinasesTransforming Growth Factor beta

Identifiers

PMID28426742
PMCPMC5398530
OpenAlexW2606104326

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.