Evidence map›Paper›PMID 28426719›Full record

ArticlePloS one2017

Transcriptome of interstitial cells of Cajal reveals unique and selective gene signatures.

Moon Young Lee, Se Eun Ha, Chanjae Park, Paul J Park, Robert Fuchs, Lai Wei, Brian G Jorgensen, Doug Redelman, Sean M Ward, Kenton M Sanders and 1 more

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed
6.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 99 citations in OpenAlex.

  1. Review
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  5. Differential responses to prostaglandins in the circular and longitudinal muscle layers of the murine ileum.American journal of physiology. Gastrointestinal and liver physiology · 2025
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  10. Interstitial cells of the sip syncytium regulate basal membrane potential in murine gastric corpus.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2024
    Article
  11. Formation of recurring transient CaProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
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  13. CaPhysiological reviews · 2024
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4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 2 countries.

Moon Young LeeDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Se Eun HaDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Chanjae ParkDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Paul J ParkDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Robert FuchsDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Lai WeiDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Brian G JorgensenDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Doug RedelmanDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Sean M WardDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Kenton M SandersDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.
Seungil RoDepartment of Physiology and Cell Biology, University of Nevada School of Medicine, Reno, Nevada, United States of America.ORCID http://orcid.org/0000-0003-0861-8334
University of Nevada, Reno · US

Funding

Roles of DNA methylation in gastrointestinal smooth muscle cellsR01DK094886 · NIDDK · UNIVERSITY OF NEVADA RENO · PI RO, SEUNGIL · 2012 to 2016
$1.5M
Engineering of functional smooth muscle cells from gastrointestinal myofibroblastR01DK103055 · NIDDK · UNIVERSITY OF NEVADA RENO · PI RO, SEUNGIL · 2015 to 2018
$1.3M
NIDDK NIH HHS R01 DK094886NIDDK NIH HHS R01 DK103055
6 · The paper itself

Abstract

Transcriptome-scale data can reveal essential clues into understanding the underlying molecular mechanisms behind specific cellular functions and biological processes. Transcriptomics is a continually growing field of research utilized in biomarker discovery. The transcriptomic profile of interstitial cells of Cajal (ICC), which serve as slow-wave electrical pacemakers for gastrointestinal (GI) smooth muscle, has yet to be uncovered. Using copGFP-labeled ICC mice and flow cytometry, we isolated ICC populations from the murine small intestine and colon and obtained their transcriptomes. In analyzing the transcriptome, we identified a unique set of ICC-restricted markers including transcription factors, epigenetic enzymes/regulators, growth factors, receptors, protein kinases/phosphatases, and ion channels/transporters. This analysis provides new and unique insights into the cellular and biological functions of ICC in GI physiology. Additionally, we constructed an interactive ICC genome browser (http://med.unr.edu/physio/transcriptome) based on the UCSC genome database. To our knowledge, this is the first online resource that provides a comprehensive library of all known genetic transcripts expressed in primary ICC. Our genome browser offers a new perspective into the alternative expression of genes in ICC and provides a valuable reference for future functional studies.

Indexed as

TranscriptomeAmino Acid SequenceAnimalsColonFlow CytometryInterstitial Cells of CajalIon ChannelsJejunumMiceSequence Homology, Amino AcidIon Channels

Identifiers

PMID28426719
PMCPMC5398589
OpenAlexW2607354784

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.