Evidence map›Paper›PMID 28426709›Full record

ArticlePloS one2017

Pdgfrb is a direct regulatory target of TGFβ signaling in atrioventricular cushion mesenchymal cells.

Yin Peng, Shun Yan, Dongquan Chen, Xiangqin Cui, Kai Jiao

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
0.3field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yin PengDivision of Research, Department of Genetics, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Shun YanDivision of Research, Department of Genetics, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Dongquan ChenDivision of Preventive Medicine, Department of Medicine, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Xiangqin CuiDepartment of Biostatistics, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.
Kai JiaoDivision of Research, Department of Genetics, The University of Alabama at Birmingham, Birmingham, Alabama, United States of America.ORCID http://orcid.org/0000-0002-5415-9020
University of Alabama at Birmingham · US

Funding

XRAY CRYSTALLOGRAPHYP30CA013148 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI Robert S Welner · 1985 to 2026
$165.9M
WV INBRE: The Inhibitor of Growth Family Member 4 (ING4) inhibits L-Type Amino Acid Transporter 1 (LAT1) expression to suppress Breast CancerP20GM103434 · NIGMS · MARSHALL UNIVERSITY · PI GARY O RANKIN · 2012 to 2026
$61.1M
The Roles of Semaphorin Signaling During Valvuloseptal DevelopmentR01HL095783 · NHLBI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI JIAO, KAI · 2010 to 2021
$3.4M
Molecular mechanisms regulating mouse valvulogenesisR03HD082634 · NICHD · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI JIAO, KAI · 2014 to 2015
$145k
NCI NIH HHS P30 CA013148NHLBI NIH HHS R01 HL095783NICHD NIH HHS R03 HD082634NIGMS NIH HHS P20 GM103434
6 · The paper itself

Abstract

Cushion formation is the initial step for the development of valvuloseptal structures in mammalian hearts. TGFβ signaling plays critical roles in multiple steps of cushion morphogenesis. We used a newly developed conditional immortal atrioventricular cushion mesenchymal cell line, tsA58-AVM, to identify the TGFβ regulatory target genes through microarray analysis. Expression of ~1350 genes was significantly altered by TGFβ1 treatment. Subsequent bioinformatic analysis of TGFβ activated genes revealed that PDGF-BB signaling is the top hit as the potential upstream regulator. Among the 37 target molecules, 10 genes known to be involved in valve development and hemostasis were selected for quantitative reverse transcription polymerase chain reaction (qRT-PCR) analysis. Our results confirmed that they are all upregulated by TGFβ1 stimulation in tsA58-AVM cells and in primary atrioventricular cushion cells. We focused on examining regulation of Pdgfrb by TGFβ1, which encodes a tyrosine kinase receptor for PDGF-BB. We found that the ~150bp Pdgfrb promoter can respond to TGFβ stimulation and that this response relies on the two SP1 binding sites within the promoter. Co-immunoprecipitation analysis confirmed SP1 interacts with SMAD2 in a TGFβ-dependent fashion. Furthermore, SMAD2 is associated with the Pdgfrb promoter and this association is diminished by knocking down expression of Sp1. Our data therefore collectively suggest that upon TGFβ stimulation, SP1 recruits SMAD2 to the promoter of Pdgfrb to up-regulate its expression and thus Pdgfrb is a direct downstream target of the TGFβ/SMAD2 signaling.

Indexed as

Signal TransductionAnimalsBecaplerminBinding SitesChromatin ImmunoprecipitationMesenchymal Stem CellsMiceMyocytes, CardiacPromoter Regions, GeneticProto-Oncogene Proteins c-sisReceptor, Platelet-Derived Growth Factor betaReverse Transcriptase Polymerase Chain ReactionSmad2 ProteinSp1 Transcription FactorTransforming Growth Factor betaBecaplerminProto-Oncogene Proteins c-sisReceptor, Platelet-Derived Growth Factor betaSmad2 ProteinSmad2 protein, mouseSp1 Transcription FactorTransforming Growth Factor beta

Identifiers

PMID28426709
PMCPMC5398542
OpenAlexW2606009302

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.