Evidence map›Paper›PMID 28424941›Full record

ArticleCurrent microbiology2017

Isolation and Complete Genome Sequence of a Novel Pseudoalteromonas Phage PH357 from the Yangtze River Estuary.

Zheng Gong, Min Wang, Qingwei Yang, Zhongshi Li, Jun Xia, Yu Gao, Yong Jiang, Xue Meng, Zhaoyang Liu, Ding Yang and 3 more

Abstract read
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Article in Current microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed.

  1. Article
  2. Characterization ofFrontiers in microbiology · 2024
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  5. Genome and Ecology of a NovelMicrobiology spectrum · 2021
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Zheng GongCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Min WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. mingwang@ouc.edu.cn.
Qingwei YangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Zhongshi LiCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Jun XiaCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yu GaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yong JiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. yongjiang@ouc.edu.cn.ORCID http://orcid.org/0000-0001-6055-488X
Xue MengCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Zhaoyang LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Ding YangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Fangfei ZhangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Hongbing ShaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Duobing WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phage PH357, a novel lytic Pseudoalteromonas lipolytica phage belonging to the Myoviridae family was isolated from the Yangtze River estuary. The microbiological characterization demonstrated that phage PH357 is stable from -20 to 60 °C and the optimal pH 7. The one-step growth curve showed a latent period of 20 min, a rise period of 20 min, and the average burst size was about 85 virions per cell. Complete genome of phage PH357 was determined. Genome of phage PH357 consisted of a linear, double-stranded 136,203 bp DNA molecule with 34.58% G + C content, and 242 putative open reading frames (ORFs) without tRNA. All the predicted ORFs were classified into eight functional groups, including DNA replication, regulation and nucleotide metabolism, transcription, translation, phage packaging, phage structure, lysis, host or phage interactions, and hypothetical protein. A phylogenetic analysis showed that phage PH357 had similarity to the previously published Pseudoalteromonas phage PH101 and Vibrio phages. Furthermore, the study of phage PH357 genome will provide useful information for further research on the interaction between phages and their hosts.

Indexed as

Genome, ViralBacteriophagesBase CompositionBase SequenceDNA, ViralEstuariesMolecular Sequence DataMyoviridaeOpen Reading FramesPhylogenyPseudoalteromonasRiversDNA, Viral

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.