Evidence map›Paper›PMID 28424939›Full record

ArticleCurrent microbiology2017

Characterization and Complete Genome Sequence of a Novel Siphoviridae Bacteriophage BS5.

Xue Meng, Min Wang, Siyuan You, Duobing Wang, Yan Li, Zhaoyang Liu, Yu Gao, Lu Liu, Yaoyuan Zhang, Zhenghao Yan and 3 more

Abstract read
PubMed Publisher
In one paragraph

Article in Current microbiology, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Genome and Ecology of a NovelMicrobiology spectrum · 2021
    Article
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  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Xue MengCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Min WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. mingwang@ouc.edu.cn.
Siyuan YouCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Duobing WangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yan LiCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Zhaoyang LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yu GaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Lu LiuCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Yaoyuan ZhangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Zhenghao YanNo.1 Middle School, Pingdu, 266700, Shandong, China.
Chunyan LiuNo.58 Middle School, Qingdao, 266003, Shandong, China.
Yong JiangCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China. yongjiang@ouc.edu.cn.ORCID http://orcid.org/0000-0001-6055-488X
Hongbing ShaoCollege of Marine Life Sciences, Ocean University of China, Qingdao, 266003, China.
Ocean University of China · CNShandong University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A novel Siphoviridae family Phage BS5, which infects Pseudoalteromonas atlantica, was isolated from the surface waters of the Yellow Sea. Morphological study by transmission electron microscopy revealed that the novel phage belongs to Siphoviridae. The complete genome sequence of PBS5 contained a linear, double-strand 39949-bp DNA molecule with a G + C content of 40.6% and 65 putative open reading frames. Twelve conserved domains were detected by BLASTP in NCBI, and of these the functions of 5 were known. The genome was grouped into four modules as follows: phage structure, phage packaging, DNA replication and regulation, and some additional functions.16 S rDNA sequence analysis was also applied to identify the host bacteria. After initial characterization of bacteriophage PBS5, it was found that the optimal pH was 7.0, the optimal temperature was 30 °C, and the burst size was about 95 virions per cell. This information will provide an important benchmark for further research on the interaction between bacteriophages and their hosts.

Indexed as

Genome, ViralBacteriophagesBase CompositionOpen Reading FramesPhylogenyPseudoalteromonasSiphoviridaeViral ProteinsViral ProteinsGenomicPhageSiphoviridae family PhageYellow Sea

Identifiers

PMID28424939
OpenAlexW2606523118

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.