Evidence map›Paper›PMID 28424524›Full record

ArticleScientific reports2017

HqiA, a novel quorum-quenching enzyme which expands the AHL lactonase family.

Marta Torres, Stéphane Uroz, Rafael Salto, Laure Fauchery, Emilia Quesada, Inmaculada Llamas

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
3.6field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 69 citations in OpenAlex.

  1. Review
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  15. Frontiers in plant science · 2022
    Article
  16. Article
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  18. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 3 countries.

Marta TorresDepartment of Microbiology, Faculty of Pharmacy, University of Granada, Granada, Spain.
Stéphane UrozUMR 1136 INRA-Université de Lorraine Interactions Arbres-Microorganismes, Centre INRA de Nancy, Champenoux, France.
Rafael SaltoDepartment of Biochemistry and Molecular Biology II, Faculty of Pharmacy, University of Granada, Granada, Spain.
Laure FaucheryUMR 1136 INRA-Université de Lorraine Interactions Arbres-Microorganismes, Centre INRA de Nancy, Champenoux, France.
Emilia QuesadaDepartment of Microbiology, Faculty of Pharmacy, University of Granada, Granada, Spain.
Inmaculada LlamasDepartment of Microbiology, Faculty of Pharmacy, University of Granada, Granada, Spain. illamas@ugr.es.ORCID http://orcid.org/0000-0001-6333-5033
Universidad de Granada · ESInteractions Arbres-Microorganismes · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The screening of a metagenomic library of 250,000 clones generated from a hypersaline soil (Spain) allowed us to identify a single positive clone which confers the ability to degrade N-acyl homoserine lactones (AHLs). The sequencing of the fosmid revealed a 42,318 bp environmental insert characterized by 46 ORFs. The subcloning of these ORFs demonstrated that a single gene (hqiA) allowed AHL degradation. Enzymatic analysis using purified HqiA and HPLC/MS revealed that this protein has lactonase activity on a broad range of AHLs. The introduction of hqiA in the plant pathogen Pectobacterium carotovorum efficiently interfered with both the synthesis of AHLs and quorum-sensing regulated functions, such as swarming motility and the production of maceration enzymes. Bioinformatic analyses highlighted that HqiA showed no sequence homology with the known prototypic AHL lactonases or acylases, thus expanding the AHL-degrading enzymes with a new family related to the cysteine hydrolase (CHase) group. The complete sequence analysis of the fosmid showed that 31 ORFs out of the 46 identified were related to Deltaproteobacteria, whilst many intercalated ORFs presented high homology with other taxa. In this sense, hqiA appeared to be assigned to the Hyphomonas genus (Alphaproteobacteria), suggesting that horizontal gene transfer had occurred.

Indexed as

Bacterial ProteinsCarboxylic Ester HydrolasesChromatography, High Pressure LiquidDeltaproteobacteriaGene Transfer, HorizontalMass SpectrometryMetagenomicsMultigene FamilyOpen Reading FramesPectobacterium carotovorumQuorum SensingSequence Analysis, DNASoil MicrobiologySpainBacterial ProteinsCarboxylic Ester HydrolasesN-acyl homoserine lactonase

Identifiers

PMID28424524
PMCPMC5430456
OpenAlexW2606444600

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.