Evidence map›Paper›PMID 28424521›Full record

ArticleNature2017

Visualizing multistep elevator-like transitions of a nucleoside transporter.

Marscha Hirschi, Zachary Lee Johnson, Seok-Yong Lee

Abstract read
In one paragraph

Article in Nature, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Article
  3. Elucidation of the Gemcitabine Transporters ofInternational journal of molecular sciences · 2024
    Article
  4. Review
  5. Article
  6. How Cryo-EM Has Expanded Our Understanding of Membrane Transporters.Drug metabolism and disposition: the biological fate of chemicals · 2023
    Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Insight into the nucleoside transport and inhibition of human ENT1.Current research in structural biology · 2022
    Article
  13. Article
  14. Review
  15. Structural basis for the MgScience advances · 2021
    Article
  16. Solvent accessibility changes in a NaThe Journal of biological chemistry · 2020
    Article
  17. Article
  18. Article
  19. Elevator-type mechanisms of membrane transport.Biochemical Society transactions · 2020
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Marscha HirschiDepartment of Biochemistry, Duke University Medical Center, 303 Research Drive, Durham, North Carolina 27710, USA.
Zachary Lee JohnsonDepartment of Biochemistry, Duke University Medical Center, 303 Research Drive, Durham, North Carolina 27710, USA.
Seok-Yong LeeDepartment of Biochemistry, Duke University Medical Center, 303 Research Drive, Durham, North Carolina 27710, USA.

Funding

Overall EvaluationP41GM103403 · NIGMS · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2012 to 2017
$14.3M
Training (303-338)P41GM116799 · NIGMS · NEW YORK STRUCTURAL BIOLOGY CENTER · PI HENDRICKSON, WAYNE A. · 2016 to 2020
$7.1M
Structure, function, and pharmacology of neuronal membrane transport proteinsR35NS097241 · NINDS · DUKE UNIVERSITY · PI LEE, SEOK-YONG · 2016 to 2023
$6.1M
Pixel Array Detector for X-ray CrystallographyS10RR029205 · NCRR · CORNELL UNIVERSITY · PI EALICK, STEVEN E · 2010 to 2010
$1.8M
Structure and Function of Concentrative Nucleoside TransportersR01GM100984 · NIGMS · DUKE UNIVERSITY · PI LEE, SEOK-YONG · 2013 to 2016
$1.2M
NCRR NIH HHS S10 RR029205NIGMS NIH HHS P41 GM103403NIGMS NIH HHS P41 GM116799NIGMS NIH HHS R01 GM100984NINDS NIH HHS R35 NS097241
6 · The paper itself

Abstract

Membrane transporters move substrates across the membrane by alternating access of their binding sites between the opposite sides of the membrane. An emerging model of this process is the elevator mechanism, in which a substrate-binding transport domain moves a large distance across the membrane. This mechanism has been characterized by a transition between two states, but the conformational path that leads to the transition is not yet known, largely because the available structural information has been limited to the two end states. Here we present crystal structures of the inward-facing, intermediate, and outward-facing states of a concentrative nucleoside transporter from Neisseria wadsworthii. Notably, we determined the structures of multiple intermediate conformations, in which the transport domain is captured halfway through its elevator motion. Our structures present a trajectory of the conformational transition in the elevator model, revealing multiple intermediate steps and state-dependent conformational changes within the transport domain that are associated with the elevator-like motion.

Indexed as

Models, BiologicalMovementBinding SitesCrystallizationCrystallography, X-RayCysteineElevators and EscalatorsLigandsModels, MolecularMutationNeisseriaNucleoside Transport ProteinsProtein DomainsUridineCysteineLigandsNucleoside Transport ProteinsUridine

Identifiers

PMID28424521
PMCPMC5567992

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.