Evidence map›Paper›PMID 28424096›Full record

ArticleMicrobial cell factories2017

Metabolic and proteomic analyses of product selectivity and redox regulation in Clostridium pasteurianum grown on glycerol under varied iron availability.

Christin Groeger, Wei Wang, Wael Sabra, Tyll Utesch, An-Ping Zeng

Open access · goldAbstract read
In one paragraph

Article in Microbial cell factories, 2017. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
2.0field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 29 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Christin GroegerInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestr.15, 21073, Hamburg, Germany.
Wei WangInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestr.15, 21073, Hamburg, Germany.
Wael SabraInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestr.15, 21073, Hamburg, Germany.
Tyll UteschInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestr.15, 21073, Hamburg, Germany.
An-Ping ZengInstitute of Bioprocess and Biosystems Engineering, Hamburg University of Technology, Denickestr.15, 21073, Hamburg, Germany. aze@tuhh.de.
Hamburg University of Technology · DEUniversität Hamburg · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClostridium pasteurianum as an emerging new microbial cell factory can produce both n-butanol (BuOH) and 1,3-propanediol (1,3-PDO), and the pattern of product formation changes significantly with the composition of the culture medium. Among others iron content in the medium was shown to strongly affect the products selectivity. However, the mechanism behind this metabolic regulation is still unclear. For a better understanding of such metabolic regulation and for process optimization, we carried out fermentation experiments under either iron excess or iron limitation conditions, and performed metabolic, stoichiometric and proteomic analyses.

results1,3-PDO is most effectively produced under iron limited condition (Fe-), whereas 1,3-PDO and BuOH were both produced under iron rich condition (Fe+). With increased iron availability the BuOH/1,3-PDO ratio increased significantly from 0.27 mol/mol (at Fe-) to 1.4 mol/mol (at Fe+). Additionally, hydrogen production was enhanced significantly under Fe+ condition. Proteomic analysis revealed differentiated expression of many proteins including several ones of the central carbon metabolic pathway. Among others, pyruvate: ferredoxin oxidoreductase, hydrogenases, and several electron transfer flavoproteins was found to be strongly up-regulated under Fe+ condition, pointing to their strong involvement in the regeneration of the oxidized form of ferredoxin, and consequently their influences on the product selectivity in C. pasteurianum. Of particular significance is the finding that H

conclusionsThe metabolic, stoichiometric and proteomic results clearly show the key roles of hydrogenases and ferredoxins dependent reactions in determining the internal redox balance and hence product selectivity. Not only the NADH pool but also the regulation of the ferredoxin pool could explain such product variation under different iron conditions.

Indexed as

1-ButanolClostridiumCulture MediaFermentationFerredoxinsFlavoproteinsGlycerolHydrogenHydrogenaseIronMetabolic Networks and PathwaysMetabolomicsOxidation-ReductionPropylene GlycolsProteomicsPyruvate Synthase1,3-propanediol1-ButanolCulture MediaFerredoxinsFlavoproteinsGlycerolHydrogenHydrogenaseIronPropylene GlycolsPyruvate Synthase1,3-PropanediolC. pasteurianumMetabolic analysisn-ButanolProduct selectivityProteomics

Identifiers

PMID28424096
PMCPMC5395762
OpenAlexW2606463463

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.